genome.fa.s499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168324.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_548, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23240

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210--535	180	1.8	177	80	4	395	41	8	7	42	1.65
210--644	176	2.4	179	78	6	429	41	8	8	40	1.67
620--697	28	3.1	28	61	30	66	35	12	7	43	1.72
732--3465	181	15.2	181	76	6	2043	39	8	11	41	1.70
1858--1896	19	1.9	20	85	15	53	38	5	15	41	1.69
732--3467	539	5.1	541	77	7	2196	39	8	11	41	1.70
3812--4574	181	4.2	180	75	9	578	40	8	9	41	1.67
4629--5198	180	3.2	177	78	8	408	41	8	10	40	1.70
5001--5042	18	2.4	18	84	15	61	45	0	9	45	1.36
4970--5303	180	1.9	180	84	5	435	39	8	9	42	1.67
4692--5922	623	2.0	619	80	7	1408	40	8	9	41	1.67
5299--6894	181	8.9	182	75	6	1153	40	8	9	40	1.69
5935--5971	18	2.0	19	89	5	58	45	5	10	37	1.62
5321--6811	539	2.8	537	78	9	1490	40	8	9	41	1.69
7420--9319	179	10.6	181	74	8	1141	40	8	9	41	1.68
7420--9319	359	5.3	354	73	10	1155	40	8	9	41	1.68
9178--9472	152	1.9	152	84	4	389	40	7	10	42	1.68
9560--9691	67	2.0	67	89	0	201	41	8	13	36	1.75
9757--10039	155	1.8	155	80	4	347	40	7	8	44	1.62
9903--19611	181	52.7	181	67	15	1766	40	8	10	41	1.69
16707--16784	28	3.1	28	61	30	66	35	12	7	43	1.72
16819--20674	536	7.2	533	74	9	2164	39	8	10	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17947--17985	19	1.9	20	85	15	53	38	5	15	41	1.69
16819--19617	539	5.2	539	77	7	2114	39	8	11	40	1.70
16819--19553	359	7.6	356	75	7	1880	39	7	11	41	1.70
19639--20665	180	5.8	176	74	9	626	40	8	9	42	1.67
21099--21140	18	2.4	18	84	15	61	45	0	9	45	1.36
20701--21294	176	3.4	173	77	8	474	41	8	10	39	1.70
20997--21833	441	1.9	440	78	7	912	39	8	9	42	1.68
21418--22160	177	4.2	177	78	9	644	40	8	8	42	1.66
22268--23236	180	5.4	180	76	8	706	41	7	9	41	1.65

Tables:   1

The End!