genome.fa.s500.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168325.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_549, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23214

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--1966	180	11.1	179	75	9	1340	40	7	10	41	1.68
1128--1433	166	1.8	167	85	4	431	40	5	10	43	1.64
92--5347	713	7.4	696	71	13	1846	40	8	9	41	1.68
589--1613	346	2.9	345	79	7	822	39	6	10	42	1.66
950--1966	346	2.9	347	75	8	923	39	8	9	42	1.68
1805--2108	141	2.1	141	81	4	340	39	10	8	41	1.70
3256--3603	180	1.9	180	82	3	430	41	6	9	41	1.64
3717--4194	173	2.7	173	77	8	389	38	7	10	43	1.68
3149--5350	181	12.3	180	75	8	1123	40	8	9	41	1.68
5884--6077	101	1.9	101	79	2	219	45	7	8	38	1.63
7102--7356	138	1.8	139	82	5	329	42	11	9	36	1.74
7214--8435	181	6.8	181	76	6	989	41	8	8	41	1.66
7255--8435	361	3.3	362	78	6	1135	41	8	8	41	1.65
8475--8508	17	1.9	18	88	5	52	52	2	5	38	1.41
9026--9059	18	2.0	17	88	11	52	47	8	5	38	1.59
8744--9240	182	2.7	181	80	4	493	40	8	9	41	1.68
9260--13064	181	21.3	179	75	8	2623	40	8	10	40	1.69
12554--12898	172	2.0	172	83	3	435	41	7	8	42	1.63
13379--13425	18	2.7	18	74	12	53	40	12	4	42	1.63
13384--14018	180	3.6	176	76	9	566	36	10	10	42	1.74
13903--14144	120	2.0	119	84	4	308	33	11	8	46	1.71
14022--17816	181	21.2	181	76	7	2836	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14022--17816	360	10.6	359	76	8	2933	41	9	8	40	1.68
17042--17073	15	2.1	16	88	11	50	75	0	0	25	0.81
17831--17878	17	2.8	17	73	14	53	39	8	6	45	1.59
17825--19209	183	7.7	179	73	11	826	42	10	8	39	1.68
19023--19069	19	2.5	20	79	10	53	61	0	4	34	1.15
20263--20599	182	1.9	182	80	7	407	43	10	7	37	1.67
19320--21938	179	14.7	179	72	11	1427	41	9	8	40	1.68
20924--21864	359	2.6	359	79	5	933	41	9	8	40	1.67
21823--22070	132	1.9	133	86	4	358	44	9	6	39	1.62

Tables:   1

The End!