genome.fa.s501.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168326.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_55, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150338

Tables:   1   2   

This is table  1  of  2  ( 205 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944--988	21	2.1	20	84	12	54	57	0	0	42	0.98
10881--10926	2	23.0	2	100	0	92	0	50	0	50	1.00
10926--10965	2	20.0	2	100	0	80	50	0	0	50	1.00
11057--11129	36	2.0	36	94	0	128	30	6	35	27	1.83
12864--12899	11	3.2	11	88	4	54	58	0	0	41	0.98
13444--13472	14	2.0	15	93	6	51	55	10	0	34	1.34
16907--16948	18	2.3	18	87	0	57	71	9	14	4	1.28
17734--17774	17	2.4	17	100	0	82	21	0	12	65	1.25
21802--21891	18	4.8	18	74	8	72	33	32	5	28	1.80
21892--21921	12	2.5	12	100	0	60	36	30	0	33	1.58
24105--24156	17	3.3	15	86	8	68	36	1	13	48	1.54
24105--24156	15	3.2	17	83	8	65	36	1	13	48	1.54
25637--25797	3	52.7	3	71	14	82	59	8	1	30	1.38
25629--25742	22	5.2	22	71	20	60	60	7	0	32	1.23
25641--25797	68	2.3	66	79	13	160	58	8	1	30	1.39
26575--26988	86	4.8	86	80	5	315	39	12	16	31	1.85
26730--26783	17	3.1	17	84	12	74	37	7	16	38	1.77
26909--26955	17	2.7	18	80	3	60	38	8	14	38	1.77
27807--27907	12	8.5	12	71	13	50	5	11	2	79	1.02
27850--27906	29	2.0	29	85	0	78	5	8	1	84	0.84
27806--27902	19	4.9	19	71	11	79	6	12	3	78	1.05
27850--27908	12	4.7	12	76	17	57	5	8	1	84	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28265--28295	15	2.1	15	93	0	53	0	16	0	83	0.64
31843--31867	13	1.9	13	100	0	50	20	0	0	80	0.72
31982--32017	18	2.0	17	89	10	54	44	0	11	44	1.39
32000--32069	13	4.9	14	78	18	74	31	2	11	54	1.51
31999--32069	28	2.5	27	82	11	81	32	2	11	53	1.51
31999--32068	14	4.9	15	75	18	60	32	2	11	52	1.52
32086--32127	19	2.2	19	86	0	57	2	9	7	80	0.97
32151--32247	24	3.9	25	78	16	87	74	6	1	18	1.09
32151--32247	26	3.8	26	84	12	114	74	6	1	18	1.09
32151--32223	27	2.8	27	89	10	116	73	6	0	19	1.04
32217--32256	19	2.2	19	86	4	55	77	2	5	15	1.04
32153--32254	11	9.3	11	69	20	63	74	5	1	17	1.11
34305--34329	13	1.9	13	100	0	50	64	0	4	32	1.12
35948--36021	12	5.6	14	74	17	61	52	4	0	43	1.20
37585--37619	17	2.0	18	94	5	63	62	0	0	37	0.95
37585--37642	22	2.9	21	80	14	61	60	0	1	37	1.07
45674--45715	6	7.0	6	88	0	57	69	11	14	4	1.34
46005--46044	20	2.0	20	85	5	53	70	0	25	5	1.08
46172--46212	16	2.4	18	88	8	59	7	2	70	19	1.22
46452--46491	19	2.1	19	85	4	53	22	0	7	70	1.12
46687--46737	26	2.0	25	84	3	66	47	1	7	43	1.43
52630--52654	13	1.9	13	100	0	50	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52784--52827	14	2.9	15	86	6	63	34	0	11	54	1.36
52784--52834	16	3.2	16	75	13	52	37	0	11	50	1.39
52784--52828	15	3.0	15	80	9	56	33	0	11	55	1.35
52775--52855	29	2.7	30	76	5	83	35	1	9	53	1.42
52850--52909	28	2.2	28	88	5	88	6	5	6	81	0.98
52864--52909	15	3.2	15	71	22	53	4	6	4	84	0.85
52986--53032	24	1.9	24	86	4	67	72	4	8	14	1.24
53885--53924	21	1.9	21	85	10	55	47	30	2	20	1.63
54323--54352	14	2.1	14	93	0	51	76	0	0	23	0.78
54850--55673	414	2.0	413	94	0	1452	36	13	22	26	1.92
55708--56099	86	4.6	86	79	4	326	40	13	15	31	1.85
55849--55893	18	2.6	18	76	16	58	37	8	15	37	1.79
56917--56995	12	6.5	12	71	17	56	3	13	3	78	1.03
56909--56953	21	2.1	21	84	8	56	2	17	4	75	1.07
56917--56976	26	2.3	25	78	13	68	5	16	3	75	1.12
56910--56989	36	2.2	36	82	14	94	3	15	3	77	1.05
56960--57021	21	3.0	20	86	6	79	1	9	6	82	0.91
56967--57020	26	2.1	26	86	6	74	0	9	5	85	0.75
56912--57006	14	6.7	14	72	11	68	3	13	4	78	1.01
58253--58548	59	5.1	58	82	9	327	38	12	6	43	1.67
58249--58528	120	2.4	118	84	8	333	38	12	6	42	1.68
58544--58607	6	11.5	6	85	11	84	82	0	1	15	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58549--58600	27	1.9	27	100	0	104	82	0	1	15	0.75
59194--59247	28	2.0	27	85	3	72	62	12	0	24	1.30
59544--59658	39	2.9	39	84	8	117	66	0	5	28	1.13
59544--59658	19	5.8	20	76	11	110	66	0	5	28	1.13
59603--59884	4	70.2	4	65	21	78	67	2	2	26	1.17
59603--59735	35	3.4	39	81	13	134	62	1	2	33	1.17
59603--59732	8	16.4	8	72	19	87	62	1	2	33	1.17
59640--59742	35	3.0	35	88	4	138	61	1	1	34	1.18
59584--59883	7	42.1	7	67	21	76	67	2	2	27	1.17
59782--59886	32	3.1	32	85	10	113	77	2	1	18	0.99
59783--59878	25	3.8	25	80	9	97	77	3	2	17	1.00
59816--59885	7	10.6	7	84	9	94	82	0	1	15	0.73
60067--60304	45	5.6	42	76	14	213	39	19	14	26	1.90
60064--60274	86	2.4	88	85	8	290	40	18	13	26	1.88
60067--60357	42	6.9	40	76	12	191	40	18	15	26	1.90
60197--60369	40	4.2	42	77	13	127	35	21	16	27	1.94
60064--60357	89	3.5	79	80	12	227	39	19	14	26	1.90
61369--61400	8	4.0	8	100	0	64	12	0	0	87	0.54
71777--72051	58	4.7	58	88	7	394	36	13	6	44	1.70
71777--72073	117	2.5	118	86	7	419	37	12	6	43	1.68
71777--72053	59	4.7	60	87	7	390	36	12	6	44	1.70
72069--72141	5	14.0	5	79	11	76	76	1	1	20	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72068--72141	20	3.5	20	87	9	87	75	1	2	20	1.00
72092--72135	14	3.1	14	87	9	54	81	2	0	15	0.78
72128--72178	19	2.7	19	76	11	52	64	1	1	31	1.15
72416--72446	12	2.6	12	100	0	62	48	6	6	38	1.55
72748--72772	13	1.9	13	100	0	50	20	0	0	80	0.72
73011--73040	10	3.0	10	95	0	51	0	43	0	56	0.99
75102--75127	12	2.2	12	100	0	52	69	0	0	30	0.89
76718--76774	20	3.0	18	75	12	51	61	0	1	36	1.07
78200--79199	369	2.7	371	93	1	1736	17	32	25	25	1.97
81006--81047	6	7.0	6	88	0	57	69	11	14	4	1.34
81337--81375	19	2.0	19	85	5	51	69	0	25	5	1.09
81736--81773	20	1.9	19	89	5	58	34	0	7	57	1.28
81767--81805	18	2.0	20	85	9	55	20	0	10	69	1.17
82001--82051	26	2.0	25	84	3	66	47	1	7	43	1.43
87944--87968	13	1.9	13	100	0	50	20	0	0	80	0.72
88098--88141	14	2.9	15	86	6	63	34	0	11	54	1.36
88098--88148	16	3.2	16	75	13	52	37	0	11	50	1.39
88098--88142	15	3.0	15	80	9	56	33	0	11	55	1.35
88164--88225	29	2.2	29	88	5	92	6	4	6	82	0.95
88179--88223	17	2.7	16	83	10	54	4	6	4	84	0.87
89201--89240	21	1.9	21	85	10	55	47	30	2	20	1.63
89639--89668	14	2.1	14	93	0	51	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90166--90989	414	2.0	413	94	0	1432	36	13	22	26	1.92
91024--91415	86	4.6	86	79	4	301	40	13	15	31	1.85
91172--91205	18	2.0	16	88	11	50	35	11	11	41	1.78
91311--91382	35	2.1	35	84	5	92	40	11	12	36	1.79
91336--91382	18	2.7	18	76	3	60	40	8	12	38	1.74
92233--92323	12	7.6	12	70	18	55	4	13	4	78	1.06
92225--92269	21	2.1	21	84	8	56	2	17	4	75	1.07
92233--92315	26	3.4	25	75	18	70	4	14	3	77	1.08
92226--92301	40	2.1	35	81	16	84	3	14	3	77	1.06
92261--92323	15	4.1	15	74	11	56	4	11	3	80	0.97

Tables:   1   2