genome.fa.s507.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168332.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_555, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23074

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5309--5990	45	15.4	45	82	5	789	16	33	37	12	1.86
5448--5525	35	2.2	35	88	6	113	17	37	35	8	1.82
6160--6191	11	3.0	11	95	4	57	18	37	34	9	1.83
6693--9693	45	65.8	45	88	5	3981	16	33	37	12	1.86
8060--8097	19	2.0	19	94	0	67	10	23	44	21	1.83
8015--8142	64	2.0	64	93	3	222	14	31	39	14	1.87
7970--8187	109	2.0	109	92	1	366	16	32	38	13	1.87
7925--8232	154	2.0	154	96	1	564	15	32	38	13	1.87
8799--8836	19	2.0	19	100	0	76	10	21	47	21	1.80
8754--8881	64	2.0	64	93	3	222	14	30	40	14	1.86
8709--8926	109	2.0	109	90	1	348	15	31	39	13	1.86
8664--8971	154	2.0	154	97	1	582	15	31	39	13	1.86
9864--9898	11	3.2	11	91	0	52	20	34	37	8	1.83
10652--10704	26	2.0	26	92	0	88	24	28	22	24	2.00
10409--11013	173	3.5	167	84	7	756	14	33	33	17	1.91
11071--11150	40	2.0	40	90	0	124	12	36	38	12	1.81
18602--19607	45	22.4	45	88	1	1428	16	33	37	12	1.86
19778--19823	11	4.2	11	94	0	74	19	34	36	8	1.83
20318--22877	45	55.8	45	85	6	3161	16	33	37	12	1.86
21600--21637	19	2.0	19	100	0	76	10	21	47	21	1.80
21555--21682	64	2.0	64	95	3	231	14	31	39	14	1.86
21510--21727	109	2.0	109	91	1	357	15	31	39	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21465--21772	154	2.0	154	96	1	573	15	31	39	13	1.86
22339--22376	19	2.0	19	100	0	76	10	21	47	21	1.80
22249--22465	108	2.0	109	89	2	330	15	30	40	13	1.86
22204--22502	153	1.9	154	95	2	548	15	31	39	13	1.86
22159--22877	198	3.8	194	82	10	705	16	33	37	12	1.87
23048--23074	11	2.5	11	100	0	54	22	33	33	11	1.89

Tables:   1

The End!