genome.fa.s511.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168336.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_559, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22970

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185--590	171	2.4	170	80	10	431	43	7	8	40	1.63
232--590	168	2.1	169	82	9	414	42	8	8	41	1.64
1861--3002	179	6.4	178	77	9	974	42	10	7	39	1.68
3047--4196	177	6.4	177	74	9	798	40	10	8	39	1.71
2999--4195	358	3.4	351	77	8	1093	41	10	8	39	1.71
4080--4335	140	1.8	140	83	0	341	37	9	6	46	1.61
4210--7485	181	18.3	179	77	6	2482	41	10	8	39	1.69
4210--7476	539	6.1	539	78	6	2725	41	10	8	39	1.69
4210--7482	363	9.1	358	76	7	2441	41	10	8	39	1.69
7439--7471	18	1.9	17	88	11	50	42	6	3	48	1.43
8030--8061	16	2.0	17	88	11	50	6	15	18	59	1.57
9364--13122	181	21.1	177	73	9	1767	39	7	10	41	1.69
10071--10401	165	2.0	164	97	0	626	39	7	11	41	1.69
9894--10512	342	1.8	337	81	11	765	39	7	10	41	1.69
12099--12137	20	2.1	19	85	9	53	38	2	2	56	1.27
10859--12654	715	2.5	724	78	7	1663	39	7	10	42	1.68
14210--17774	178	20.0	178	71	12	1514	39	8	10	41	1.70
14261--17792	360	9.9	361	71	11	1568	39	8	10	41	1.69
16772--16810	20	2.1	19	85	9	53	38	2	2	56	1.27
17668--17713	18	2.4	18	85	10	56	26	6	2	65	1.28
15086--17825	897	3.1	881	75	9	2445	39	8	10	41	1.70
19179--19566	178	2.2	178	80	8	430	40	6	10	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20339--20367	14	2.0	15	93	6	51	58	0	0	41	0.98
19178--22360	181	17.8	175	73	10	1271	39	8	10	42	1.69
21305--21343	20	2.1	19	85	9	53	38	2	2	56	1.27
20067--21823	715	2.4	719	78	7	1603	39	8	10	42	1.68
19175--22360	358	8.9	353	73	10	2060	39	8	10	42	1.69

Tables:   1

The End!