genome.fa.s52.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167877.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_145, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66083

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1527--3260	181	9.8	180	73	12	716	41	8	7	41	1.65
1536--2194	182	3.7	180	80	5	548	40	9	7	41	1.67
2217--3260	180	5.9	182	74	11	580	42	8	7	41	1.63
3159--3197	20	1.9	20	84	5	51	25	15	7	51	1.70
3174--3351	93	1.9	93	86	6	254	47	8	6	37	1.60
3256--5734	181	13.9	179	73	10	1431	41	10	8	39	1.69
2828--3713	453	2.0	454	82	5	1087	42	8	8	40	1.66
3371--4123	180	4.2	177	74	10	428	41	10	8	39	1.71
3553--4123	176	3.2	176	76	7	415	42	10	8	39	1.70
4290--12623	536	15.6	529	72	11	1391	41	9	8	40	1.67
4713--5660	363	2.6	357	80	5	1030	41	9	8	39	1.68
5617--5864	133	1.9	133	88	3	374	45	8	7	39	1.62
5421--6046	310	2.0	312	81	7	743	43	8	8	40	1.65
5075--6325	673	1.9	668	84	6	1686	41	8	8	41	1.65
5735--12738	181	39.1	179	75	8	4585	41	9	8	40	1.67
5751--12738	361	19.5	362	75	7	5032	41	9	8	40	1.67
7981--8016	16	2.1	17	90	10	56	38	16	5	38	1.72
8815--8857	23	1.9	22	85	4	59	62	2	2	32	1.20
9053--9101	18	2.7	18	96	0	89	44	2	4	48	1.33
10435--10473	18	2.2	18	86	9	53	56	2	7	33	1.41
12052--12086	16	2.2	16	90	5	54	74	0	2	22	0.95
5752--12737	536	13.0	539	76	8	4526	41	9	8	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13120--13397	154	1.8	151	82	5	362	38	10	8	43	1.69
13242--14025	181	4.3	183	76	7	771	43	10	8	37	1.69
14289--17237	181	16.4	181	73	10	1529	41	9	8	40	1.68
14649--14673	11	2.3	11	100	0	50	64	0	0	36	0.94
14881--14908	14	2.0	14	100	0	56	35	14	0	50	1.43
14699--15077	195	1.9	196	80	7	441	40	9	7	42	1.66
15062--16029	523	1.9	519	81	5	1189	41	9	9	39	1.69
15514--17207	357	4.7	361	74	11	991	41	9	8	39	1.68
16016--17286	530	2.4	526	79	8	1245	42	9	8	40	1.68
17282--18896	181	8.9	180	75	7	1190	41	9	8	40	1.68
17319--18707	540	2.6	542	81	5	1535	42	9	8	40	1.67
19040--20545	181	8.3	176	72	10	934	42	9	8	40	1.67
20043--20078	16	2.1	17	90	10	56	41	5	8	44	1.58
20763--22232	181	8.1	180	76	9	1126	42	9	8	39	1.69
22000--22497	259	1.9	259	81	4	601	41	9	8	40	1.67
22246--26055	177	21.3	180	74	9	2369	41	10	8	40	1.69
21447--23016	797	2.0	803	78	7	1648	41	9	9	40	1.69
22259--26049	180	21.2	178	74	10	1995	41	10	8	40	1.69
22253--26055	355	10.7	355	74	8	2525	41	10	8	40	1.69
22253--26049	536	7.1	534	76	8	2326	41	10	8	40	1.69
22982--24919	887	2.2	885	77	8	1909	41	9	8	39	1.69
26056--31686	361	15.7	358	76	7	4170	41	10	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26056--31774	181	31.8	179	76	7	4067	41	10	8	39	1.69
26056--37367	539	20.8	535	70	13	4019	41	9	8	40	1.69
32286--33448	181	6.5	177	77	6	984	40	10	8	40	1.71
32301--33448	536	2.1	539	82	4	1345	40	10	8	40	1.71
33224--33708	260	1.9	261	89	0	756	38	10	8	43	1.69
33474--37383	181	22.0	180	73	9	2170	41	9	8	40	1.68
32893--34087	620	1.9	621	80	5	1400	39	9	8	41	1.69
35651--37357	176	9.5	177	72	12	682	41	9	8	40	1.68
35605--37383	175	9.9	181	73	9	962	40	9	8	40	1.69
37382--37804	176	2.4	177	79	5	435	42	8	7	41	1.64
37382--39811	180	13.7	179	73	11	1442	41	9	9	40	1.70
40844--43367	176	14.3	174	73	11	1378	41	10	8	39	1.69
40944--43367	530	4.6	523	78	9	1422	41	10	8	39	1.69
40844--43361	354	7.1	349	73	11	1031	41	10	8	39	1.69
43255--43485	118	2.0	114	81	8	270	43	9	5	41	1.61
42891--43836	475	2.0	476	81	2	1114	41	10	8	39	1.69
43368--49007	181	31.5	179	74	9	3391	41	9	8	40	1.68
43368--58357	718	20.7	710	68	14	3393	41	9	8	40	1.69
48484--48548	22	3.0	22	93	4	105	33	20	0	46	1.51
49597--50758	181	6.5	177	77	6	988	39	10	9	40	1.72
49598--50765	537	2.2	539	82	4	1376	39	10	9	40	1.71
50522--51007	261	1.9	262	89	0	758	38	10	8	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50773--51905	179	6.3	182	80	6	1039	40	9	8	41	1.68
50191--51387	622	1.9	623	80	5	1404	39	9	8	41	1.69
50773--54635	360	10.9	355	70	13	1394	40	9	8	41	1.68
52932--54635	181	9.5	178	76	8	1221	41	9	8	40	1.68
54658--58357	180	20.7	179	75	8	2273	41	10	8	39	1.69
54658--58351	356	10.4	357	74	8	2306	41	10	8	39	1.69
54658--58360	537	6.9	532	76	8	2082	41	10	8	39	1.69
58358--64069	181	31.8	178	76	7	3931	41	9	8	40	1.69
58361--66083	716	10.7	716	72	10	3892	41	9	8	40	1.68
63601--64530	468	2.0	467	78	6	972	41	10	7	40	1.68
64598--66083	181	8.3	181	79	6	1417	40	9	8	40	1.69
64092--65090	501	2.0	499	80	5	1113	40	9	7	42	1.66
64600--66020	537	2.6	537	81	5	1618	40	9	8	40	1.69

Tables:   1

The End!