genome.fa.s520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168345.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_567, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22804

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646--698	26	2.0	26	100	0	106	30	16	22	30	1.96
637--986	179	2.0	179	80	2	398	27	25	24	22	2.00
8162--8211	26	1.9	26	84	8	66	30	18	26	26	1.98
8925--8959	11	3.2	11	91	0	52	14	34	28	22	1.93
9142--10482	90	14.6	90	71	9	504	16	32	31	19	1.94
9118--9698	45	12.9	45	79	0	480	17	31	30	19	1.95
9630--9763	69	1.9	69	81	0	160	20	32	27	19	1.96
9699--10483	45	17.3	45	73	9	475	15	32	32	19	1.93
9585--9812	114	2.0	114	86	1	323	17	33	30	19	1.94
9540--9844	159	1.9	159	88	1	459	18	33	30	18	1.94
9450--9905	249	1.8	249	86	2	657	16	32	31	19	1.94
9385--10102	339	2.1	338	82	3	852	16	31	32	19	1.94
9976--10178	69	2.9	69	82	0	226	16	33	30	19	1.94
10083--10130	24	2.0	24	95	0	87	27	33	20	18	1.96
10247--10309	24	2.6	24	100	0	126	26	39	19	14	1.90
10088--10448	183	2.0	183	92	0	596	17	33	30	18	1.94
10462--10506	23	2.0	23	95	0	81	15	35	28	20	1.93
10417--10550	68	2.0	68	90	0	214	14	35	32	18	1.91
10485--10696	45	4.7	45	83	0	253	19	33	29	17	1.95
10373--10595	113	2.0	113	91	0	365	15	34	32	17	1.91
10327--10640	158	2.0	158	86	0	439	16	34	32	17	1.92
10266--10888	203	3.1	204	82	1	820	17	33	31	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10636--10764	69	1.9	69	86	3	188	20	34	27	17	1.95
10697--11251	45	12.4	45	82	3	580	15	32	31	20	1.94
18524--18922	173	2.3	170	80	7	439	22	29	28	20	1.98
18844--18896	26	2.0	26	96	0	97	26	18	26	28	1.98
19825--21173	45	29.6	45	71	9	677	15	32	31	19	1.93
20166--20625	245	1.9	248	86	1	665	15	32	31	20	1.94
20657--20704	24	2.0	24	87	0	69	25	35	22	16	1.95
20608--20810	69	3.0	67	80	4	228	17	33	30	19	1.95
20717--20760	22	2.0	22	90	0	70	13	34	29	22	1.93
21150--21197	24	2.0	24	91	0	78	25	37	22	14	1.92
21105--21243	69	2.0	70	85	4	192	17	33	32	17	1.93
21174--21410	45	5.3	44	77	8	183	16	33	31	19	1.94
21060--21287	114	2.0	114	84	6	302	17	32	31	18	1.94
20970--21366	204	2.0	203	84	2	528	16	33	32	17	1.92
22730--22804	3	25.0	3	91	0	123	33	4	0	62	1.14

Tables:   1

The End!