genome.fa.s521.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168346.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_568, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22778

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--4048	181	22.8	181	75	8	2834	39	8	10	41	1.68
2526--3412	357	2.5	361	78	6	861	41	8	8	41	1.66
25--6286	536	11.8	536	71	12	2337	40	8	9	41	1.68
3898--4569	164	4.0	164	74	10	480	40	8	10	41	1.69
4227--4741	182	2.8	179	77	5	509	41	7	9	41	1.64
4790--5046	140	1.8	138	82	4	327	41	7	8	42	1.65
4940--6283	181	7.5	178	78	8	1111	41	7	8	42	1.63
5072--6283	540	2.2	538	81	6	1344	41	7	8	42	1.63
6125--6158	17	1.9	18	88	5	52	50	0	8	41	1.34
7116--7305	102	1.9	101	83	5	249	36	6	8	48	1.60
6966--7494	282	1.9	281	82	5	665	36	6	10	46	1.64
7427--7728	165	1.8	165	85	5	423	40	6	9	43	1.63
7586--8245	182	3.7	178	76	8	455	39	8	9	42	1.67
7984--8565	320	1.8	320	80	6	696	40	7	9	41	1.66
7622--8928	682	1.9	682	80	7	1537	40	7	9	42	1.66
8265--9061	181	4.4	181	79	8	779	40	7	8	43	1.65
9423--9757	183	1.8	186	81	5	430	40	6	9	43	1.62
9535--9885	181	1.9	183	80	4	406	42	6	8	42	1.62
9617--11590	349	5.5	356	73	11	1001	40	7	9	42	1.67
10382--10695	166	1.9	169	83	3	420	39	8	10	41	1.70
10550--11631	182	6.0	179	76	7	832	39	7	10	42	1.68
11677--12340	180	3.7	178	72	8	531	41	8	9	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12700--14629	360	5.4	354	76	7	1268	40	8	9	41	1.67
12798--14584	181	9.9	180	76	8	1263	40	8	8	41	1.67
14330--14900	309	1.9	307	79	4	657	42	8	9	39	1.68
14912--15399	182	2.7	182	81	5	506	40	7	9	42	1.65
15202--15234	18	1.9	17	88	11	50	48	6	6	39	1.53
15440--19324	178	21.6	177	71	12	1816	40	8	9	41	1.68
15582--19262	357	10.2	354	71	14	1369	40	8	9	40	1.69
17611--17653	18	2.4	18	81	18	54	44	2	9	44	1.49
18608--19287	364	1.9	364	80	6	804	42	7	9	41	1.65
20577--22778	181	12.3	178	77	8	1725	41	9	8	40	1.69
21727--22585	177	4.9	171	74	11	441	39	9	9	41	1.70
20577--22656	887	2.3	882	79	8	2169	41	9	8	40	1.69
20577--22585	706	2.8	700	77	7	1903	41	9	8	40	1.69

Tables:   1

The End!