genome.fa.s525.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168350.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_571, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22697

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--780	180	4.3	181	81	5	882	40	7	10	42	1.66
1--780	361	2.2	360	83	3	971	40	7	10	42	1.66
633--904	146	1.9	146	83	1	357	40	9	8	41	1.67
1094--2540	181	8.1	180	78	6	1258	40	8	10	41	1.69
1094--4651	362	10.0	359	74	8	2161	39	8	9	41	1.69
1158--4651	877	3.9	885	75	9	2203	40	8	9	41	1.69
2549--4350	181	10.0	179	75	6	1230	39	8	9	41	1.70
3974--4349	178	2.1	181	78	5	386	38	9	9	42	1.70
4695--4874	3	64.0	3	77	16	145	34	1	3	60	1.22
4697--4913	61	3.5	63	86	9	284	31	1	5	61	1.26
4696--4919	15	15.1	15	70	17	94	31	1	4	62	1.25
4706--4917	64	3.4	64	81	12	237	31	1	4	62	1.25
9806--9838	11	3.1	11	91	4	50	84	6	6	3	0.84
10124--10167	23	1.9	23	85	0	61	70	2	13	13	1.26
11250--11367	34	3.4	34	78	14	118	31	15	16	36	1.90
11524--11746	114	2.0	114	81	3	270	21	24	15	38	1.92
11654--12031	114	3.3	113	75	5	366	21	25	14	38	1.91
12502--12650	3	52.0	3	68	18	59	30	0	5	63	1.22
12517--12555	15	2.5	15	95	4	69	38	0	0	61	0.96
12533--12638	34	3.3	31	75	11	90	29	0	7	63	1.22
12502--12650	43	3.6	43	74	11	123	30	0	5	63	1.22
13622--13655	15	2.2	16	89	5	52	76	0	2	20	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14589--18805	181	23.7	181	77	8	3167	41	9	8	40	1.67
15476--19923	181	25.1	177	73	11	2264	41	9	8	40	1.68
16028--16066	18	2.2	18	86	9	53	58	2	5	33	1.33
18235--18841	180	3.4	175	80	7	610	41	9	8	40	1.68
19156--19193	21	1.9	21	89	10	62	34	10	10	44	1.73
20418--20465	17	2.8	17	78	12	53	45	8	2	43	1.45
19982--22677	180	15.2	176	74	10	976	42	9	8	39	1.68
19973--22683	359	7.7	350	74	11	1259	42	9	8	39	1.68
19920--22379	180	13.8	180	76	8	1673	41	10	8	39	1.68
19987--22693	540	5.1	526	74	11	1577	42	9	8	39	1.68
19967--22683	714	3.8	698	77	9	1946	42	9	8	39	1.68

Tables:   1

The End!