genome.fa.s53.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167878.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65549

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--13482	900	14.9	898	76	9	11109	26	24	24	25	2.00
3267--3297	15	2.1	14	94	5	53	25	35	22	16	1.94
6037--6089	26	2.0	26	92	0	88	28	16	26	28	1.97
10657--10709	26	2.0	26	100	0	106	26	20	26	26	1.99
11559--11613	26	2.1	27	82	3	67	34	20	23	21	1.97
12469--12520	25	2.0	26	88	3	79	28	23	23	25	1.99
13068--13925	442	1.9	447	85	4	1187	25	27	25	20	1.99
15376--15428	26	2.0	26	88	0	79	28	18	22	30	1.98
16266--16316	26	1.9	27	96	4	95	29	15	27	27	1.96
17141--17193	26	2.0	26	85	0	70	30	18	20	30	1.97
18037--18089	26	2.0	26	92	0	88	28	18	24	28	1.98
14929--20109	882	5.8	886	84	6	5957	25	23	24	25	2.00
22080--22155	26	2.9	26	86	0	107	27	18	25	28	1.98
22979--23031	26	2.0	26	96	0	97	26	18	26	28	1.98
23735--23764	15	2.1	15	93	6	53	20	50	16	13	1.78
25667--25717	26	2.0	26	96	0	93	27	13	27	31	1.94
21200--26803	905	6.2	896	84	5	6855	26	24	24	25	2.00
26565--26617	26	2.0	26	88	0	79	30	18	24	26	1.98
22126--30533	873	9.5	867	74	11	5141	25	23	24	25	2.00
32197--32249	26	2.0	26	92	0	88	30	20	24	24	1.99
33976--34025	26	1.9	26	91	0	82	28	20	26	26	1.99
31321--35118	902	4.2	903	85	4	4348	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34878--34930	26	2.0	26	85	7	72	32	18	22	26	1.97
34904--35271	158	2.3	159	85	2	472	22	26	29	21	1.99
37403--37455	26	2.0	26	88	0	79	28	18	22	30	1.98
40912--40957	11	4.2	11	85	0	65	15	0	2	82	0.76
40916--40957	15	2.9	15	83	16	61	16	0	2	80	0.81
40988--41083	13	7.1	14	71	16	53	15	2	4	78	1.00
41099--41498	59	6.7	58	82	10	486	45	8	13	33	1.73
41099--41498	118	3.4	118	89	5	601	45	8	13	33	1.73
47846--47885	8	4.9	8	87	6	62	82	0	2	15	0.77
47845--47885	17	2.5	17	92	4	66	80	0	2	17	0.82
48889--49179	41	7.2	41	86	9	377	23	17	24	35	1.95
48926--49036	34	3.1	34	77	20	134	27	13	23	36	1.92
48961--49179	83	2.6	82	91	6	352	22	17	24	36	1.95
49186--49226	6	7.0	6	83	10	50	85	14	0	0	0.60
49187--49229	15	2.7	15	86	10	59	88	11	0	0	0.52
49187--49229	23	2.0	22	90	9	70	88	11	0	0	0.52
49187--49227	14	2.8	14	88	7	55	87	12	0	0	0.53
49382--49428	15	3.1	15	87	9	69	12	2	4	80	0.94
49435--49578	4	35.2	4	68	18	66	29	1	3	65	1.18
49440--49575	38	3.7	35	75	15	98	30	1	3	64	1.19
49485--49527	21	2.2	19	83	8	50	27	0	4	67	1.10
49508--49571	26	2.5	26	85	7	78	32	0	3	64	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49554--49636	43	2.0	42	81	15	100	22	3	3	69	1.19
50476--50559	5	16.8	5	70	22	61	14	4	2	78	1.01
50484--50541	11	5.4	11	81	10	57	13	6	1	77	1.05
50476--50559	11	6.3	13	69	24	50	14	4	2	78	1.01
50483--50559	18	4.2	17	76	15	66	14	5	2	77	1.04
50576--50855	59	4.7	57	83	11	332	44	8	12	34	1.73
50580--50855	121	2.3	119	87	7	384	43	8	12	35	1.73
51333--65547	891	16.1	877	84	5	15985	25	23	24	25	2.00
55941--55992	26	2.0	26	88	0	77	30	17	23	28	1.97
59438--59490	26	2.0	26	96	0	97	28	20	26	24	1.99
60328--60380	26	2.0	26	82	7	63	30	16	24	28	1.97
62115--62167	26	2.0	26	92	0	88	28	18	26	26	1.98
63004--63056	26	2.0	26	92	0	88	28	22	24	24	2.00
63895--63945	26	2.0	26	88	0	75	27	13	27	31	1.94

Tables:   1

The End!