genome.fa.s530.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168355.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_576, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22581

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11--2495	181	14.1	179	71	13	1069	41	8	9	41	1.66
6--3066	342	8.7	346	71	14	1204	40	8	9	41	1.67
982--1020	21	1.9	19	85	10	51	33	5	0	61	1.18
1555--1594	20	2.0	21	85	5	55	47	5	17	30	1.69
1403--2303	357	2.5	357	77	8	880	41	7	9	41	1.66
2406--2713	162	1.9	161	82	5	379	40	6	11	41	1.66
2568--3162	177	3.3	180	79	6	582	38	7	10	43	1.68
3173--3216	18	2.4	19	92	7	81	52	11	4	31	1.57
4318--8500	181	23.2	180	73	10	1130	40	8	9	41	1.68
5262--8559	181	18.4	181	77	6	2761	40	8	9	41	1.68
5262--8500	900	3.6	885	77	8	2960	40	8	9	40	1.68
10473--10903	181	2.4	179	80	3	513	41	8	9	39	1.69
10967--11594	180	3.5	179	77	6	511	42	9	10	37	1.73
11561--11607	19	2.7	18	74	12	53	42	4	12	40	1.63
11633--12243	313	1.9	313	78	9	647	41	8	9	40	1.68
11853--15672	181	21.4	181	74	9	2515	41	9	8	40	1.68
11853--22566	538	20.0	533	70	13	3656	41	9	8	40	1.68
14699--15672	176	5.5	175	74	7	642	42	9	7	40	1.67
15873--15905	18	1.9	17	88	11	50	39	6	6	48	1.53
15862--16187	181	1.8	181	84	1	447	42	10	7	39	1.67
16845--18159	180	7.2	178	73	12	561	41	9	8	40	1.67
17317--17359	21	2.0	21	86	8	61	39	13	6	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17134--17531	201	2.0	201	84	3	516	40	10	8	39	1.71
16830--17892	561	1.9	561	80	5	1227	41	9	8	41	1.68
17335--18836	181	8.4	175	73	10	718	42	10	7	39	1.68
17422--18836	537	2.6	536	79	9	1361	41	9	8	40	1.68
18866--19525	179	3.7	177	75	8	546	39	8	9	41	1.69
19423--19735	157	2.0	155	79	9	341	42	7	9	40	1.66
20014--22566	181	14.2	180	74	9	1651	42	9	7	40	1.66
19993--22566	361	7.2	358	73	10	1736	42	9	7	40	1.66

Tables:   1

The End!