genome.fa.s540.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168365.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_585, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22273

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129--711	309	1.9	309	79	8	668	38	8	10	43	1.69
459--1922	178	8.3	173	72	12	703	40	7	9	42	1.67
1808--2055	130	1.9	133	83	7	328	39	8	8	43	1.66
2010--2606	182	3.3	180	78	9	536	40	8	8	42	1.66
1994--2956	358	2.7	354	78	7	915	40	8	9	41	1.68
2010--2957	181	5.2	180	75	10	487	40	8	9	41	1.69
1994--5763	348	10.7	355	69	14	1036	40	8	9	42	1.67
3082--3836	181	4.2	176	73	9	435	38	8	10	42	1.69
3364--5719	181	13.5	174	69	15	479	40	7	9	42	1.66
3722--4006	147	1.9	150	81	10	352	37	6	10	45	1.64
3869--5879	181	11.3	179	76	7	1646	40	7	9	42	1.66
3869--12376	361	23.6	357	69	14	3149	40	8	9	41	1.68
6044--6510	177	2.6	178	80	6	498	38	7	10	43	1.68
7366--8601	182	6.9	176	74	9	719	39	8	10	41	1.69
7223--12396	181	28.8	181	73	10	3030	40	8	9	41	1.69
7794--8579	180	4.4	181	77	7	482	40	8	10	40	1.69
8616--12396	180	21.2	177	75	9	2521	40	8	9	41	1.68
7893--9356	753	1.9	749	85	4	2020	40	8	10	40	1.70
10798--12376	176	8.8	179	77	8	1297	40	7	9	41	1.67
12274--12496	120	1.9	119	86	2	322	47	8	11	33	1.69
12092--12670	297	1.9	299	80	5	677	42	8	9	38	1.69
11916--12848	472	2.0	479	81	5	1118	42	9	10	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12984--13030	19	2.7	18	74	12	53	42	4	12	40	1.63
13280--17146	181	21.6	181	76	7	2889	40	10	8	40	1.69
13280--17146	360	10.8	358	75	8	2665	40	10	8	40	1.69
13280--17152	541	7.2	540	75	8	2708	40	10	8	40	1.69
16310--16340	16	1.9	16	93	0	53	58	6	16	19	1.59
16896--17417	271	1.9	269	83	6	671	41	9	7	40	1.66
17348--17380	18	1.9	17	88	11	50	39	6	6	48	1.53
17163--17664	182	2.8	181	80	6	500	42	9	7	40	1.66
17331--17662	181	1.8	181	85	4	463	41	10	7	40	1.68

Tables:   1

The End!