genome.fa.s542.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168367.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_587, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31--6635	180	37.0	181	74	9	4244	41	10	8	40	1.69
47--11701	898	13.1	890	72	12	5536	41	10	8	40	1.69
3703--7642	359	10.9	361	72	11	2401	40	9	8	40	1.68
7140--7657	182	2.9	180	80	4	587	41	8	9	41	1.66
7693--8304	181	3.4	175	79	7	642	40	9	8	42	1.67
8330--9622	182	7.2	181	75	8	1035	42	10	8	38	1.70
7725--8987	691	1.8	686	82	5	1596	41	10	8	39	1.69
8303--9520	536	2.3	531	82	3	1412	42	10	8	38	1.70
10111--11380	540	2.4	536	78	6	1228	41	9	7	41	1.66
9636--11701	181	11.4	181	74	7	1313	41	9	7	41	1.66
11295--11334	21	2.0	20	85	5	53	62	2	0	35	1.09
11402--11428	13	2.1	13	100	0	54	22	14	7	55	1.64
11466--11970	267	1.9	264	79	5	570	43	6	8	41	1.61
11712--12782	180	6.0	177	75	8	772	41	8	8	41	1.66
12467--12509	20	2.0	20	82	8	50	60	2	6	30	1.35
11718--12784	359	3.0	350	77	10	931	41	8	8	41	1.66
12818--12864	21	2.2	22	88	3	69	68	4	8	19	1.33
12817--12865	22	2.2	22	82	7	64	69	4	8	18	1.30
12875--13460	182	3.3	178	77	5	549	43	8	8	40	1.64
13238--14120	462	1.9	456	79	8	986	42	10	8	39	1.68
13666--18568	180	27.4	178	72	12	1575	42	9	8	40	1.67
15215--15555	171	2.0	171	83	7	426	44	8	6	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14999--22154	180	39.7	180	70	12	3021	42	9	8	39	1.69
13698--18620	541	9.2	539	73	11	2970	42	9	8	40	1.67
17331--17374	18	2.3	19	80	15	54	40	11	6	40	1.68
17346--17379	18	2.0	17	88	11	52	44	5	2	47	1.42
13666--22150	721	11.8	716	70	13	3226	42	9	8	39	1.68
18460--18728	145	1.8	147	83	6	359	42	9	8	39	1.67
19133--22154	181	16.9	181	72	10	1362	41	9	8	39	1.70
19182--22154	359	8.3	352	72	11	1461	41	10	8	39	1.70
20800--22065	700	1.8	697	79	5	1505	41	8	9	39	1.68

Tables:   1

The End!