genome.fa.s545.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168370.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_59, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143476

Tables:   1   2   

This is table  1  of  2  ( 125 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3333--3723	57	6.7	57	87	9	567	34	12	8	45	1.71
3739--3824	5	17.6	5	77	20	85	80	1	2	16	0.88
3739--3824	14	6.2	13	77	16	59	80	1	2	16	0.88
3854--3895	10	4.0	11	81	12	61	76	2	0	21	0.90
3855--3891	14	2.7	14	91	4	58	78	2	0	18	0.87
6043--6095	26	2.0	26	96	0	97	26	20	20	32	1.98
6678--11835	889	5.9	863	80	9	5348	25	24	24	25	2.00
8442--8494	26	2.0	26	85	0	70	28	24	18	28	1.98
10344--10420	35	2.2	35	97	0	145	28	46	3	20	1.68
19015--19065	26	2.0	26	92	0	84	29	25	15	29	1.96
17911--21747	865	4.3	865	82	7	4265	25	24	23	25	2.00
20781--20833	26	2.0	26	96	0	97	32	22	16	28	1.96
19924--21726	889	2.0	900	85	4	2454	26	24	23	25	2.00
21244--21313	27	2.6	27	90	0	104	58	7	4	30	1.44
21538--21884	159	2.2	158	83	0	406	20	29	26	23	1.99
23357--24124	411	1.9	414	82	3	976	19	28	27	24	1.99
26521--26573	26	2.0	26	96	0	97	28	22	18	30	1.98
25659--34995	891	10.5	892	84	4	11069	25	24	23	25	2.00
27423--27483	26	2.4	26	91	5	99	27	24	21	26	1.99
29195--29247	26	2.0	26	88	0	79	28	24	16	30	1.97
31865--31917	26	2.0	26	88	0	79	28	22	18	30	1.98
32756--32808	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33644--33696	26	2.0	26	96	0	97	28	24	20	26	1.99
34997--43835	875	10.1	873	84	4	10230	25	24	24	25	2.00
40322--43835	903	3.9	892	84	3	4595	26	24	23	25	2.00
42996--43048	26	2.0	26	92	0	88	28	28	18	24	1.98
44021--44099	26	3.0	26	98	0	149	27	26	18	26	1.98
56747--56797	24	2.0	26	92	7	88	27	23	21	27	1.99
54864--60983	859	7.0	865	86	7	8253	25	24	24	25	2.00
62688--62740	26	2.0	26	88	0	79	26	24	18	30	1.98
61118--63438	862	2.7	845	85	7	3023	27	24	22	25	2.00
64616--64668	26	2.0	26	88	0	79	28	24	20	26	1.99
65505--65557	26	2.0	26	100	0	106	30	26	16	26	1.97
65789--65826	19	2.0	19	100	0	76	21	5	21	52	1.66
66413--66462	26	1.9	26	91	0	82	30	22	20	28	1.98
63561--68945	889	6.0	896	85	5	6856	25	24	24	25	2.00
68186--68238	26	2.0	26	88	0	79	26	22	20	30	1.98
69598--69975	159	2.4	159	83	1	465	20	27	26	25	1.99
70619--70686	34	2.0	33	88	8	102	10	17	26	45	1.80
72319--72371	26	2.0	26	96	0	97	26	24	20	28	1.99
71021--75550	892	5.1	890	84	4	5695	26	23	23	26	2.00
74074--74126	26	2.0	26	96	0	97	28	26	18	26	1.98
74975--75027	26	2.0	26	100	0	106	26	26	20	26	1.99
75662--75714	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76349--76401	26	2.0	26	100	0	106	26	26	20	26	1.99
74880--77583	687	4.0	686	93	2	4303	26	22	24	25	2.00
77009--77061	26	2.0	26	100	0	106	26	26	20	26	1.99
78782--78834	26	2.0	26	96	0	97	28	26	18	26	1.98
79386--81128	869	2.0	878	85	4	2381	25	23	23	26	2.00
81721--81773	26	2.0	26	100	0	106	26	26	20	26	1.99
82607--82659	26	2.0	26	96	0	97	28	26	18	26	1.98
83488--83540	26	2.0	26	92	7	90	26	26	18	28	1.98
84213--88219	891	4.6	891	85	4	4881	26	23	24	26	2.00
86022--86072	26	2.0	26	96	0	93	29	23	17	29	1.97
88243--88295	26	2.0	26	92	0	88	26	24	22	26	2.00
89139--89191	26	2.0	26	96	0	97	28	24	20	26	1.99
91765--91817	26	2.0	26	92	0	88	28	28	16	26	1.97
90028--96035	887	6.8	886	81	8	6435	25	24	23	25	2.00
94358--94407	26	1.9	26	91	0	82	24	28	20	28	1.99
95245--95296	26	2.0	26	96	0	95	28	25	19	26	1.98
96861--96913	26	2.0	26	89	7	81	30	24	16	28	1.97
97751--97803	26	2.0	26	92	0	88	26	24	18	30	1.98
95990--98013	888	2.3	886	87	3	2899	24	24	25	25	2.00
98786--98816	15	2.1	15	93	0	53	87	0	3	9	0.66
98754--98816	34	1.9	32	83	6	81	80	3	4	11	0.97
98796--98891	43	2.3	43	79	15	103	71	5	3	19	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98880--99056	74	2.3	78	79	12	192	66	4	2	27	1.23
99215--99266	26	2.0	27	88	3	79	3	0	9	86	0.69
99274--99447	42	4.1	42	89	2	253	35	23	17	24	1.95
99274--99447	84	2.1	84	91	4	280	35	23	17	24	1.95
101011--101102	46	2.0	46	80	4	105	17	29	20	32	1.96
101243--101294	26	2.0	26	92	0	86	28	25	17	28	1.97
102135--102187	26	2.0	26	92	0	88	26	26	22	24	2.00
103018--103067	26	1.9	26	95	0	91	22	32	20	26	1.98
101054--105524	882	5.1	875	86	5	5506	25	24	24	26	2.00
106267--106697	59	7.2	58	81	11	471	33	12	8	45	1.73
106683--106710	13	2.2	13	100	0	56	53	0	21	25	1.46
106759--106851	5	18.6	5	74	18	79	78	2	4	15	1.00
106759--106851	11	8.2	11	75	13	82	78	2	4	15	1.00
106754--106851	26	3.8	25	79	19	103	77	2	5	15	1.03
106764--106851	31	2.9	30	83	9	99	78	2	4	14	1.01
106754--106851	18	5.2	18	73	22	78	77	2	5	15	1.03
107839--107970	4	32.8	4	65	18	51	64	3	1	30	1.20
107841--107966	43	2.9	43	77	10	105	63	3	1	30	1.22
108168--108215	1	48.0	1	78	0	51	2	0	8	89	0.56
108168--108215	18	2.7	18	96	0	87	2	0	8	89	0.56
108168--108215	25	2.0	24	91	4	78	2	0	8	89	0.56
108222--108526	42	7.2	42	87	6	420	34	24	16	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109552--109636	8	10.8	8	69	20	63	11	11	0	76	1.02
109549--109639	31	2.9	31	92	7	157	12	12	0	75	1.04
109560--109639	23	3.7	23	76	20	93	12	12	0	75	1.06
109568--109623	13	4.8	13	82	17	70	12	12	0	75	1.06
120053--120452	59	6.7	59	83	7	495	33	13	8	44	1.75
120053--120452	119	3.4	118	87	6	542	33	13	8	44	1.75
120467--120559	5	19.6	5	73	14	81	77	2	3	17	1.00
120590--120629	4	10.5	4	84	10	57	77	2	0	20	0.88
120589--120632	15	3.0	14	87	12	70	77	2	0	20	0.88
120590--120629	19	2.1	19	90	0	62	77	2	0	20	0.88
121565--121630	23	2.7	24	81	9	71	66	3	0	30	1.06
121596--121633	16	2.4	16	86	4	51	65	5	0	28	1.14
121701--121745	15	2.9	16	86	6	65	80	4	2	13	0.97
121814--124517	872	3.1	868	84	6	3221	26	23	23	26	2.00
124855--124907	26	2.0	26	92	0	88	30	24	18	26	1.98
125759--125811	26	2.0	26	100	0	106	26	26	20	26	1.99
126350--126402	26	2.0	26	85	7	72	32	20	18	28	1.97
127256--127308	26	2.0	26	96	0	97	26	24	20	28	1.99
129609--129661	26	2.0	26	100	0	106	26	26	20	26	1.99
127752--136057	877	9.5	866	83	5	9584	25	24	24	25	2.00
132421--136057	878	4.2	874	85	3	4772	26	24	23	26	2.00
135324--136780	723	2.0	720	86	5	2026	23	25	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136052--141070	871	5.7	871	84	5	6241	25	24	24	25	2.00
136052--141070	865	5.7	873	85	4	6285	25	24	24	25	2.00
140806--140858	26	2.0	26	100	0	106	30	26	16	26	1.97
141546--141942	58	6.6	59	83	9	493	33	13	9	44	1.75
141963--142051	5	17.6	5	74	19	78	78	2	4	14	1.00
141963--142051	26	3.6	25	77	18	87	78	2	4	14	1.00
141963--142052	35	2.5	36	82	10	105	77	2	5	14	1.04
142928--143005	40	1.9	39	82	14	97	69	5	3	21	1.25
142982--143128	4	36.2	4	69	15	54	65	4	1	29	1.19
142982--143127	19	7.8	18	69	19	86	65	4	1	29	1.20

Tables:   1   2