genome.fa.s55.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167880.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_148, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65141

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3691--3782	3	31.7	3	81	10	102	30	0	2	67	1.03
3674--3760	28	2.9	29	86	8	113	26	1	3	68	1.12
4240--4339	51	2.0	51	82	4	121	33	13	17	37	1.88
4613--4674	25	2.4	25	78	7	63	14	4	8	72	1.24
4634--4690	25	2.3	25	82	14	66	15	0	10	73	1.09
5078--5119	19	2.2	20	86	4	59	66	2	4	26	1.23
13795--20080	181	35.1	179	74	8	3851	40	8	9	41	1.69
13795--37700	361	65.8	359	68	13	6657	40	8	9	41	1.69
18455--19108	171	3.7	167	74	12	456	38	7	10	43	1.67
19632--19678	24	1.9	24	82	4	58	44	4	12	38	1.62
19867--19902	18	2.1	18	90	10	58	44	2	13	38	1.59
20044--20096	16	3.1	16	73	23	54	43	1	7	47	1.42
20036--20115	35	2.3	35	88	0	115	43	5	6	45	1.51
20456--20554	47	2.1	48	98	1	191	36	8	12	43	1.72
20504--21143	181	3.5	179	74	8	569	38	8	9	44	1.67
21490--27035	359	15.3	358	72	11	2772	40	8	10	41	1.70
21495--27035	180	30.6	181	71	11	2769	40	8	10	41	1.70
23811--23933	64	1.9	64	85	3	167	46	6	10	36	1.64
21487--27007	542	10.2	544	72	11	2627	40	8	10	40	1.70
25552--25867	166	1.9	169	81	3	388	43	8	8	39	1.67
25905--25937	18	1.9	17	88	11	50	48	6	6	39	1.53
26657--26991	168	2.0	168	80	9	380	40	7	8	42	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26951--27088	44	3.1	43	68	24	124	42	5	13	39	1.66
26964--27114	45	3.3	44	68	23	125	39	4	14	41	1.67
26946--27124	89	2.0	89	97	0	340	40	6	12	40	1.68
27047--29076	181	11.3	180	74	8	1192	39	8	9	42	1.68
28205--28246	17	2.5	17	80	3	50	35	0	4	59	1.19
28693--28717	11	2.3	11	100	0	50	36	0	0	64	0.94
28952--29229	153	1.8	152	83	5	373	40	7	9	42	1.66
29089--30166	182	5.9	180	77	6	1005	38	8	10	42	1.71
30167--30796	181	3.5	179	82	5	666	41	8	10	39	1.69
30665--30942	145	1.9	147	85	4	393	39	7	11	42	1.69
30781--37700	181	38.6	181	75	8	4689	40	8	9	41	1.68
30781--37684	360	19.3	357	74	8	4250	40	8	9	41	1.68
33195--33221	13	2.1	13	100	0	54	40	0	7	51	1.30
37571--37818	133	1.9	133	87	3	365	38	7	8	44	1.64
37704--41631	181	22.0	179	74	10	1680	40	8	9	41	1.68
38898--42308	181	19.1	174	73	11	1432	40	8	10	41	1.68
37704--42315	721	6.5	708	73	11	2468	40	8	9	41	1.68
40672--40711	20	2.0	21	85	5	55	47	5	17	30	1.69
41524--41831	162	1.9	161	82	5	379	40	6	11	41	1.66
41686--42280	177	3.3	180	80	6	598	38	7	10	43	1.68
41686--42315	182	3.5	181	79	5	573	39	7	10	42	1.68
42291--42334	18	2.4	19	92	7	81	52	11	4	31	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42097--42505	201	2.0	202	78	9	426	40	8	9	41	1.68
43436--46010	181	14.1	177	72	12	653	40	8	10	41	1.69
43433--46549	181	17.2	180	71	12	577	41	8	9	40	1.68
43437--47693	362	11.7	360	72	12	2357	40	8	9	41	1.68
44164--44570	213	1.9	215	79	6	468	40	8	10	40	1.70
44379--46010	181	9.1	181	79	4	1636	40	8	10	40	1.69
44401--46666	722	3.2	718	78	8	1986	41	8	9	40	1.69
45885--46217	163	2.0	163	80	2	366	42	9	10	36	1.72
46048--46651	179	3.4	175	76	8	469	43	7	8	39	1.65
46636--46697	31	2.0	31	100	0	124	54	6	12	25	1.62
46667--47693	176	5.7	177	74	11	611	40	7	9	42	1.66
49599--50073	180	2.7	179	77	8	493	42	8	9	39	1.67
50700--50732	18	1.9	17	88	11	50	42	6	12	39	1.67
50696--50741	19	2.6	18	80	13	60	39	4	15	41	1.67
50986--54816	179	21.4	179	74	9	2486	41	9	8	40	1.68
50986--54816	177	21.4	178	74	8	2323	41	9	8	40	1.68
50986--54812	715	5.4	709	74	10	2388	41	9	8	40	1.68
55016--55048	18	1.9	17	88	11	50	39	6	6	48	1.53
55005--55330	181	1.8	181	83	1	438	42	10	7	39	1.68
55637--57977	181	12.9	181	71	10	1084	41	9	8	40	1.67
55807--56431	180	3.5	179	77	7	487	43	8	7	40	1.64
56459--56501	21	2.0	21	86	8	61	39	13	6	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56276--56673	200	2.0	202	83	4	502	41	10	8	39	1.71
55972--57035	561	1.9	561	80	6	1242	41	9	8	40	1.68
58005--58624	181	3.4	180	75	7	422	39	8	9	42	1.69
58006--58716	181	3.9	180	74	7	412	40	8	9	41	1.69
58564--58874	158	2.0	155	80	8	344	42	7	9	40	1.66
58758--65117	181	35.7	180	73	10	3347	42	9	8	40	1.67
58755--65117	361	17.8	361	73	10	3787	42	9	8	40	1.67
58725--65078	542	11.9	530	72	12	2512	42	9	8	40	1.67
61970--62273	146	2.1	145	81	5	350	41	9	8	40	1.68
64225--64258	17	1.9	18	88	5	52	41	8	0	50	1.34
62127--65109	180	16.6	177	74	9	1737	41	9	7	40	1.67

Tables:   1

The End!