genome.fa.s56.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167881.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64952

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736--1144	224	1.8	223	86	3	590	42	17	12	26	1.86
925--2460	466	3.3	465	85	3	2023	38	16	13	31	1.86
3121--4482	671	2.0	678	88	4	2001	39	18	13	29	1.88
3797--4928	466	2.5	462	84	6	1446	38	18	13	29	1.89
5345--7987	467	5.6	466	84	4	3279	31	13	17	37	1.89
5312--9268	946	4.2	942	83	6	4692	30	13	18	37	1.89
7969--9226	477	2.6	478	87	3	1798	29	14	18	38	1.89
8957--9579	311	2.0	312	87	2	887	28	14	17	39	1.89
9269--11148	467	4.1	463	82	4	2314	30	13	17	38	1.89
11147--12263	465	2.4	462	82	3	1413	30	13	18	37	1.89
11878--12641	377	2.0	377	84	5	1004	31	13	17	37	1.88
13911--14526	306	2.0	309	83	2	783	29	12	19	38	1.88
15131--19356	449	9.3	448	79	7	4260	30	13	18	37	1.89
15131--19356	915	4.7	911	83	5	5030	30	13	18	37	1.89
19175--19581	226	1.8	225	90	1	654	23	14	19	42	1.88
18721--20069	675	2.0	674	90	1	2128	28	13	18	38	1.89
19396--22767	913	3.7	912	87	3	4478	30	12	17	38	1.88
21872--22819	463	2.0	463	87	1	1310	31	13	16	38	1.88
22535--22602	33	2.0	34	85	2	93	42	11	10	35	1.76
26401--26677	151	1.8	151	90	3	450	48	18	11	21	1.79
39523--40578	528	2.0	528	99	0	2069	39	12	13	33	1.83
40947--41038	3	30.0	3	80	4	94	57	5	1	35	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48966--49274	163	1.9	163	94	0	546	36	13	22	27	1.92
55193--55278	44	2.0	44	81	4	102	16	5	5	72	1.24
55307--55345	16	2.4	16	80	12	53	17	5	0	76	0.96
55464--55498	16	2.1	17	89	5	54	14	17	0	68	1.21
56079--56175	32	3.0	32	71	22	78	16	8	3	72	1.22
56720--56770	19	2.7	20	76	11	54	21	1	0	76	0.88
57208--57252	19	2.2	21	84	7	58	15	6	4	73	1.21
58833--58880	22	2.3	20	85	7	60	4	8	8	79	1.06
59124--59171	21	2.3	20	82	10	60	8	6	8	77	1.14
59390--59558	13	12.7	13	69	15	87	20	3	2	73	1.09
59389--59461	21	3.7	21	74	15	66	17	0	4	78	0.91
59433--59530	25	3.9	25	80	9	85	20	5	1	73	1.08
60083--60134	9	5.3	9	78	13	50	9	1	5	82	0.90
60356--60392	16	2.2	17	86	13	51	16	8	0	75	1.02
60594--60641	23	2.2	23	85	7	64	18	4	6	70	1.25
60749--60805	22	2.7	21	76	15	55	15	0	5	78	0.91
60910--60950	21	1.9	22	85	14	59	7	7	7	78	1.11
61019--61060	17	2.4	18	88	11	61	19	2	4	73	1.12
61381--61481	1	101.0	1	72	0	58	8	2	3	84	0.86
61592--61621	15	2.0	15	93	0	51	10	6	0	83	0.81
62195--62248	20	2.9	18	82	15	65	11	5	1	81	0.93
62192--62306	58	2.0	57	80	13	128	13	11	2	73	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62551--62615	17	3.7	17	78	12	69	23	3	4	69	1.21
62552--62618	11	6.3	11	69	19	52	22	2	4	70	1.19
62549--62618	34	2.0	34	86	8	97	22	2	4	70	1.19
63461--63498	17	2.3	16	90	4	58	10	13	2	73	1.19
64018--64055	15	2.7	15	88	8	53	15	5	2	76	1.08
64098--64145	25	2.0	25	83	4	62	31	6	4	58	1.42
64196--64259	27	2.4	27	74	10	67	15	6	3	75	1.14
64834--64872	19	2.1	19	85	0	51	5	2	7	84	0.84

Tables:   1

The End!