genome.fa.s58.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167883.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_150, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64877

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4508--6045	181	8.5	179	78	4	1340	39	9	9	41	1.70
6108--15693	181	52.9	181	70	13	3119	41	10	8	39	1.69
6108--15693	356	26.9	354	70	13	2808	41	10	8	39	1.69
9871--15636	181	32.4	179	75	9	3738	41	10	8	39	1.69
9405--10359	494	1.9	493	84	4	1282	42	10	8	38	1.70
14760--15188	166	2.5	163	77	15	388	41	8	8	41	1.65
14883--15185	166	1.8	164	83	6	405	40	8	6	43	1.63
16589--16632	8	5.5	8	84	10	54	20	0	0	79	0.73
16584--16643	26	2.3	26	82	2	75	25	1	0	73	0.93
16589--16634	13	3.5	13	82	14	58	19	0	0	80	0.71
20742--20797	26	2.2	26	86	0	76	80	0	10	8	0.91
22348--24430	181	11.6	180	75	7	1513	38	9	10	41	1.71
22348--24444	361	5.8	359	77	7	1694	38	9	10	41	1.71
24326--24603	146	1.9	146	89	1	432	38	13	11	36	1.81
24135--24758	328	1.9	321	82	4	761	41	10	10	37	1.74
24456--25503	182	5.8	181	78	8	932	41	8	10	40	1.69
24599--25503	180	5.0	185	77	9	667	41	7	10	40	1.67
25373--25657	154	1.9	155	88	1	439	43	7	10	39	1.67
25494--39657	181	78.6	181	75	8	9731	39	8	10	41	1.69
26066--26114	25	2.0	25	95	0	89	44	6	12	36	1.67
27301--27329	3	10.0	3	92	7	51	31	0	0	68	0.89
27065--43922	181	93.8	179	73	9	6536	39	8	10	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25494--44817	362	53.8	360	74	9	12379	39	8	10	41	1.69
29642--29680	19	2.0	21	85	10	55	48	10	7	33	1.66
30154--30433	153	1.8	154	82	2	357	40	9	12	38	1.75
34410--34459	16	2.8	19	74	20	54	44	8	12	36	1.71
39501--39812	155	2.0	155	84	4	407	42	7	8	41	1.64
40498--40533	16	2.1	17	90	10	56	44	8	5	41	1.58
39656--49537	542	18.5	538	75	9	6877	40	8	9	41	1.68
43786--44240	163	2.8	157	74	17	377	39	8	9	42	1.68
44441--44786	178	1.9	180	82	4	439	37	9	10	42	1.72
44836--46366	181	8.5	179	76	5	1168	40	8	10	39	1.71
45051--46354	361	3.6	359	78	6	1203	41	9	10	39	1.70
46218--46521	154	2.0	152	83	3	387	39	5	11	43	1.65
46380--49537	182	17.5	181	76	6	2473	40	7	9	41	1.67
46389--49524	181	17.4	179	76	7	2426	40	7	9	42	1.67
49034--49089	18	3.1	20	73	23	61	39	5	12	42	1.65
50082--50238	58	2.7	57	90	2	233	36	14	7	42	1.73
51147--51200	20	2.7	21	83	16	71	66	3	3	25	1.25
51166--51272	42	2.6	41	81	14	114	60	1	5	31	1.30
51269--51305	20	1.9	19	89	10	58	54	2	2	40	1.29
51267--51309	18	2.4	16	79	20	50	55	2	2	39	1.25
51360--51386	8	3.4	8	100	0	54	77	0	0	22	0.76
51320--51405	34	2.4	34	75	11	84	74	3	3	18	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51580--51709	46	3.0	42	83	10	156	40	20	13	24	1.89
51587--51751	41	3.9	42	83	8	149	40	20	13	26	1.90
51674--51869	83	2.4	81	77	13	204	36	22	15	25	1.93
51628--51852	42	5.5	40	80	8	215	36	21	15	27	1.93
51628--51882	42	6.2	42	79	9	208	36	22	14	26	1.93
52157--52262	43	2.5	42	78	10	115	33	16	12	36	1.87
52430--52488	22	2.7	21	86	5	73	33	20	8	37	1.83
53715--53775	8	7.6	8	81	7	61	8	11	0	80	0.91
57872--57896	13	1.9	13	100	0	50	80	0	0	20	0.72
57872--57908	18	2.1	18	90	10	58	78	2	0	18	0.87
58798--64510	181	32.1	181	74	8	3559	39	8	9	42	1.68
62076--62390	166	1.9	166	83	7	404	38	9	9	42	1.69

Tables:   1

The End!