genome.fa.s580.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168405.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_620, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21420

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61--679	179	3.5	176	77	8	594	40	10	7	40	1.69
1336--1376	20	2.0	20	86	9	57	36	9	4	48	1.58
740--1886	181	6.4	180	77	7	923	40	10	7	41	1.68
716--1886	358	3.3	353	76	7	968	40	10	7	40	1.68
1635--2157	271	1.9	268	83	4	676	42	9	7	41	1.64
2088--2120	18	1.9	17	88	11	50	39	6	6	48	1.53
1927--2339	182	2.3	182	80	5	444	40	8	7	42	1.66
2052--2401	181	1.9	180	81	5	411	42	10	7	40	1.66
2695--5176	181	13.9	180	75	8	1674	41	9	8	40	1.68
3266--3577	162	1.9	162	82	5	389	38	8	9	43	1.68
3425--5181	361	4.9	360	76	7	1358	41	10	8	39	1.70
3448--9306	542	11.0	524	72	12	1788	41	9	8	40	1.68
5771--6080	158	2.0	158	79	5	342	42	9	8	39	1.67
5925--9253	361	9.3	355	75	8	2241	42	9	7	40	1.67
5925--9300	181	19.0	178	75	10	2230	41	9	8	40	1.67
5925--9300	355	9.5	355	75	9	2188	41	9	8	40	1.67
8011--8324	170	1.9	169	81	4	382	41	9	7	41	1.66
9360--9398	18	2.2	18	100	0	78	35	10	15	38	1.81
9424--10632	180	6.8	178	71	14	455	42	9	7	40	1.66
9991--10891	180	5.1	180	75	9	675	42	9	7	40	1.65
11043--11090	21	2.3	21	100	0	96	43	0	4	52	1.20
11186--12379	359	3.3	354	81	5	1255	41	8	8	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11187--12425	539	2.3	542	81	5	1440	41	8	8	40	1.67
11187--12553	180	7.6	181	77	7	1135	40	8	8	41	1.68
13237--16306	181	17.2	181	75	8	2028	42	10	7	39	1.68
13231--16292	718	4.3	707	76	8	2464	42	10	7	39	1.68
15078--15110	17	2.0	17	88	5	50	39	12	0	48	1.40
13151--16292	357	8.8	356	74	8	2022	42	10	7	39	1.68
16533--17255	199	3.7	199	78	5	687	41	12	12	34	1.80
17789--18980	180	6.7	178	77	9	799	40	9	9	40	1.70
18152--18833	353	1.9	360	82	8	849	38	9	10	41	1.72
20226--21417	182	6.6	182	74	9	547	41	9	8	40	1.68
20287--21417	359	3.1	358	77	9	1014	41	9	8	40	1.67

Tables:   1

The End!