genome.fa.s586.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168411.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_626, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21287

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650--704	18	3.1	18	79	12	69	47	10	7	34	1.66
400--1367	529	1.8	529	82	5	1229	41	8	9	40	1.68
383--1373	348	2.8	349	79	8	908	41	8	9	40	1.68
8--1367	181	7.7	179	76	10	995	41	8	8	41	1.66
1393--1425	18	1.9	17	88	11	50	39	6	6	48	1.53
1590--1646	27	2.1	27	90	0	87	36	8	8	45	1.66
1814--4596	181	15.5	179	75	7	1982	41	9	8	40	1.68
1916--4567	541	4.9	537	76	6	1990	41	9	8	40	1.68
1814--4596	360	7.8	359	76	6	2034	41	9	8	40	1.68
4114--5084	488	2.0	490	83	3	1224	42	9	8	39	1.68
4593--5789	181	6.7	178	76	6	930	41	9	8	40	1.69
4593--5777	358	3.3	356	75	7	1000	41	9	8	40	1.69
5506--6110	321	1.9	318	79	5	682	40	9	7	42	1.65
5803--7945	181	11.9	180	76	7	1623	42	9	8	40	1.67
5803--7931	540	3.9	541	79	6	1935	42	9	8	40	1.67
7949--8877	180	5.2	180	77	5	457	38	8	11	41	1.72
7950--11568	181	20.1	180	76	5	2786	39	8	10	41	1.70
12015--12067	27	2.0	27	96	0	97	60	11	3	24	1.47
12155--14078	181	10.7	178	75	8	1111	41	9	8	40	1.68
12144--14072	534	3.6	535	77	7	1542	41	9	8	40	1.68
12155--14085	357	5.4	359	78	5	1616	41	9	8	40	1.68
14749--14783	18	1.9	18	88	0	52	25	8	17	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14611--15345	200	3.7	199	78	5	691	35	12	11	40	1.80
15572--20894	181	29.8	181	74	8	3284	39	8	9	42	1.68
15928--20271	899	4.9	896	74	9	2301	40	7	9	42	1.67
15577--20899	536	9.9	527	74	11	2142	39	8	9	42	1.68
18698--19012	171	1.9	169	82	1	405	41	8	10	39	1.71
19084--20267	538	2.2	540	82	6	1404	41	8	8	41	1.65
20754--21158	163	2.4	161	79	5	423	39	8	9	42	1.68

Tables:   1

The End!