genome.fa.s590.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168415.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_63, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139765

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11317--11687	96	3.9	95	84	7	471	29	11	19	39	1.87
11317--11734	48	8.8	48	79	8	358	29	11	19	38	1.88
11317--11680	144	2.5	144	82	7	420	29	11	20	38	1.87
11666--11888	44	5.1	44	83	6	220	30	13	16	39	1.87
11618--11898	44	6.3	43	80	10	217	29	12	17	39	1.87
12391--12418	4	7.0	4	100	0	56	50	50	0	0	1.00
13187--13459	61	4.6	59	84	9	333	46	7	11	34	1.69
13187--13459	60	4.6	60	85	5	347	46	7	11	34	1.69
13198--13459	117	2.2	116	85	6	321	46	8	11	33	1.68
14143--14177	3	12.0	3	87	6	54	28	0	2	68	1.04
14177--14244	6	10.0	7	78	12	63	5	11	0	82	0.83
14180--14249	16	3.8	18	76	16	63	7	10	0	82	0.83
14179--14230	27	1.9	26	88	7	77	7	7	0	84	0.77
14179--14249	26	2.6	27	82	12	83	7	9	0	83	0.82
14188--14250	27	2.4	26	82	15	76	7	11	0	80	0.89
21982--22029	20	2.4	20	80	16	55	77	14	4	4	1.08
21767--22285	256	2.0	258	91	3	834	36	14	14	34	1.86
22239--22285	20	2.3	20	80	16	53	76	14	4	4	1.09
27461--27486	13	2.0	13	100	0	52	76	7	0	15	0.99
27516--27936	56	7.4	57	93	6	675	35	12	7	44	1.70
28335--28396	27	2.3	27	80	8	63	69	4	3	22	1.22
29370--29399	14	2.1	14	93	6	51	63	3	0	33	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29593--29631	21	1.9	21	89	5	62	15	28	35	20	1.93
31248--31293	19	2.3	20	85	10	60	6	4	10	78	1.08
32119--32477	199	1.8	199	81	4	456	34	13	8	43	1.74
32621--32663	21	2.2	19	83	8	50	74	2	0	23	0.93
34295--34648	61	5.9	59	86	7	466	35	11	7	45	1.69
36092--36354	85	3.1	85	80	7	250	46	14	17	21	1.84
36156--36387	85	2.7	84	82	4	268	47	16	16	19	1.82
36558--36844	34	8.5	34	80	1	128	39	13	17	30	1.88
36555--36643	17	5.4	17	74	14	78	47	13	11	28	1.77
36599--36844	34	7.2	34	82	0	231	37	12	19	30	1.89
36741--36802	17	3.6	17	76	8	63	30	16	22	30	1.96
36604--36844	102	2.4	103	80	0	270	37	12	19	30	1.89
38037--38137	16	6.7	15	73	19	68	4	18	3	72	1.19
38060--38120	6	9.8	6	75	18	54	3	14	3	78	1.00
38052--38120	25	2.8	24	85	10	86	4	15	4	75	1.12
38060--38120	24	2.5	24	84	10	79	3	14	3	78	1.00
38497--38536	21	1.9	21	94	0	71	2	12	2	82	0.87
44153--44365	115	1.8	113	83	9	279	33	11	8	46	1.71
45659--45815	44	3.6	44	78	1	172	41	13	15	29	1.85
45775--46104	96	3.4	95	78	10	314	39	17	13	29	1.88
45775--46101	48	6.8	47	77	9	252	39	17	13	29	1.88
45811--46101	143	2.0	144	83	4	365	39	17	12	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51692--51919	116	2.0	116	99	0	447	27	20	11	40	1.87
57643--57951	169	1.8	169	79	6	358	36	14	7	42	1.74
60901--60925	9	2.8	9	100	0	50	12	0	0	88	0.53
70739--70785	19	2.4	19	80	13	51	4	4	14	76	1.09
70482--70999	257	2.0	256	94	0	901	34	14	14	37	1.86
71592--71929	187	1.8	186	79	5	396	36	14	7	41	1.74
73060--73093	18	1.9	17	88	5	50	76	0	23	0	0.79
76173--76219	19	2.4	19	80	13	51	4	4	17	74	1.14
76172--76219	20	2.4	19	79	6	51	4	4	16	75	1.12
78479--78546	19	3.6	18	78	13	66	79	0	14	5	0.91
78497--78540	11	4.3	11	76	23	51	81	0	11	6	0.86
78549--78586	3	13.0	3	83	5	51	65	2	0	31	1.06
79269--79607	60	5.7	60	87	3	452	34	11	7	46	1.68
80881--81258	44	8.3	43	79	9	224	38	18	13	29	1.89
80891--81353	48	10.1	43	79	8	218	39	18	12	29	1.88
80952--81456	48	10.8	47	81	6	449	39	19	12	29	1.88
100997--101035	12	3.3	12	85	3	53	25	2	0	71	0.98
102039--102094	10	5.3	10	81	12	67	83	0	14	1	0.72
102041--102087	14	3.4	14	80	8	53	82	0	14	2	0.75
102803--103215	60	6.9	59	84	5	447	37	9	5	47	1.59
105153--105235	17	4.9	17	83	5	73	44	12	16	26	1.83
105153--105247	34	2.9	34	85	7	99	44	11	17	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105188--105510	34	9.5	34	75	5	206	38	12	18	31	1.88
105188--105247	17	3.5	17	95	0	102	41	11	21	25	1.87
105194--105510	68	4.6	68	76	8	286	38	11	18	31	1.87
105398--105451	17	3.2	16	82	10	63	46	14	12	25	1.81
105407--105463	17	3.4	17	73	9	53	38	19	12	29	1.88
106696--106792	15	7.3	14	74	21	68	8	13	1	77	1.04
106695--106807	18	5.4	21	73	18	78	7	14	0	76	1.04
106711--106821	7	15.9	7	81	12	90	9	15	0	74	1.10
106719--106821	39	2.5	42	79	17	85	8	15	0	74	1.10
106725--106786	19	3.2	19	80	15	65	8	11	1	79	1.01
106695--106812	8	14.8	8	72	18	59	7	15	0	76	1.05
110774--111145	121	3.1	119	82	8	434	35	10	6	47	1.64
110774--111148	60	6.2	61	84	6	428	35	10	6	48	1.63
112605--112864	85	3.1	84	76	6	274	44	16	18	20	1.87
113115--113157	17	2.5	17	88	0	59	30	20	18	30	1.97
114086--114164	29	2.9	27	81	12	81	3	16	3	75	1.09
114094--114164	29	2.5	28	84	11	83	2	18	4	74	1.10
114113--114166	9	5.8	9	76	8	54	1	18	3	75	1.03
114113--114166	19	2.9	18	78	8	54	1	18	3	75	1.03
118140--118510	60	6.1	60	86	5	451	33	11	7	47	1.69
119780--120006	44	5.1	44	81	4	199	40	18	13	28	1.88
119890--120307	48	8.8	48	82	4	429	38	20	12	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133188--133230	9	5.1	8	88	5	59	83	0	2	13	0.74
133175--133230	17	3.2	17	78	12	69	82	0	5	12	0.83
133175--133251	34	2.2	33	82	13	93	76	0	5	18	0.96
136852--136890	12	3.3	12	85	3	53	25	2	0	71	0.98
137875--137931	7	7.9	7	75	14	53	78	1	17	1	0.91
138540--138796	116	2.2	115	83	6	315	37	9	7	46	1.63
138574--138826	57	4.4	58	82	10	290	35	10	6	47	1.64
138544--138827	116	2.5	115	79	10	310	35	9	6	47	1.63

Tables:   1

The End!