genome.fa.s6.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167831.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_103, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86414

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381--1201	422	1.9	424	97	1	1551	23	18	19	38	1.93
9941--9990	12	4.3	12	72	10	50	22	8	8	62	1.49
10675--10775	38	2.6	39	76	10	100	15	4	5	73	1.21
10729--10766	15	2.4	16	82	4	51	18	5	2	73	1.14
10808--10849	17	2.4	17	84	8	57	16	2	7	73	1.15
10791--10928	18	7.9	17	68	16	50	12	7	5	73	1.22
10880--10954	29	2.6	28	80	15	75	10	5	6	77	1.12
10971--11009	12	3.2	12	85	3	51	17	2	0	79	0.84
11109--11139	9	3.4	9	90	0	53	9	0	3	87	0.66
11103--11152	25	1.9	27	88	8	77	14	4	4	78	1.05
11109--11150	21	2.2	18	84	16	50	11	2	2	83	0.84
11110--11152	18	2.4	17	81	11	50	13	2	2	81	0.89
12398--13534	467	2.4	466	84	4	1406	37	15	12	33	1.86
12409--13534	468	2.4	466	83	5	1393	38	15	12	33	1.86
13559--15915	466	5.1	465	86	2	3054	38	16	12	31	1.87
15919--17992	466	4.5	466	87	1	2912	38	18	13	30	1.88
18631--24574	467	12.6	465	74	11	4114	38	17	12	30	1.88
20901--21158	129	2.0	129	86	0	363	39	19	15	24	1.91
21030--24591	465	7.7	463	85	4	4409	38	17	12	30	1.87
24627--26530	465	4.2	455	82	7	2042	38	17	12	30	1.88
26532--29268	449	6.0	449	82	5	3020	37	17	13	31	1.88
27665--29268	466	3.4	464	84	3	2018	38	17	13	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28901--29632	366	2.0	368	85	3	985	39	17	13	29	1.88
29599--29660	33	1.9	32	90	3	97	40	6	12	40	1.69
29881--31270	464	3.0	463	87	2	1921	38	18	13	29	1.89
29271--31270	914	2.2	912	82	6	2479	38	18	13	29	1.89
31610--31682	34	2.1	34	100	0	146	52	17	10	19	1.74
31941--32873	466	2.0	468	84	2	1207	37	18	13	30	1.89
32543--33258	388	1.8	389	86	2	1044	37	18	14	29	1.91
32873--34109	465	2.6	462	83	4	1511	37	18	13	30	1.89
34507--46057	466	24.7	465	77	8	9092	37	18	13	30	1.89
38549--38954	201	2.0	201	81	5	480	32	14	15	38	1.87
68084--68109	2	13.0	2	100	0	52	50	0	0	50	1.00
72207--72278	35	2.1	35	100	0	144	45	13	2	37	1.59
80043--80351	163	1.9	163	91	0	501	36	13	21	29	1.91
84425--84462	19	2.0	19	89	0	58	47	0	2	50	1.15
84719--84816	50	2.0	50	91	2	162	33	33	9	23	1.86
85158--85334	89	2.0	88	94	5	313	50	9	19	21	1.75
85556--85619	27	2.4	28	84	5	78	25	1	3	70	1.11
86220--86276	24	2.5	22	73	26	55	8	5	5	80	1.00

Tables:   1

The End!