genome.fa.s601.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168426.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_64, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138588

Tables:   1   2   

This is table  2  of  2  ( 201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102158--102197	20	2.0	20	85	9	55	52	0	0	47	1.00
102225--102257	15	2.2	15	100	0	66	60	6	0	33	1.21
102283--102339	17	3.5	16	75	17	55	45	0	1	52	1.11
102936--102982	15	3.5	13	78	16	51	55	0	0	44	0.99
103305--103646	181	1.9	182	81	4	422	41	10	8	39	1.71
103298--103707	181	2.3	177	78	7	416	41	10	8	39	1.70
104138--104463	180	1.8	178	82	6	426	40	10	6	42	1.66
104691--104724	13	2.5	13	90	4	50	50	2	0	47	1.16
106766--106816	16	3.1	16	73	15	50	47	0	1	50	1.12
106928--106969	14	2.9	15	75	7	50	45	0	0	54	0.99
106917--106967	25	2.0	26	88	11	79	45	1	0	52	1.12
106917--106979	25	2.5	24	78	14	65	46	1	0	52	1.10
109015--109068	13	4.3	12	83	6	63	59	3	0	37	1.15
109015--109068	25	2.2	25	83	6	65	59	3	0	37	1.15
109866--109929	20	3.2	20	73	18	53	46	3	0	50	1.17
109941--109982	17	2.5	17	88	3	59	52	0	0	47	1.00
109943--110176	23	9.9	23	69	17	92	51	1	1	45	1.19
110105--110162	16	3.8	16	77	8	59	53	0	1	44	1.10
110048--110165	40	2.7	40	73	19	94	50	0	2	46	1.21
110221--110276	20	2.7	21	86	8	78	46	5	5	42	1.49
111546--111578	13	2.4	14	90	10	50	51	0	6	42	1.26
111807--112315	181	2.8	180	77	10	506	42	10	7	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111807--112675	181	4.9	177	74	10	489	42	8	8	40	1.66
114855--114894	20	2.0	20	85	9	55	47	7	0	45	1.31
114909--114964	22	2.7	20	81	8	58	53	1	1	42	1.21
115037--115080	22	2.0	22	81	0	52	52	0	4	43	1.22
115308--115352	15	2.8	17	78	21	60	57	0	4	37	1.19
116377--116493	49	2.2	54	76	19	145	41	6	4	47	1.50
116392--116502	49	2.3	50	92	3	181	44	7	3	45	1.49
117032--117077	7	6.7	7	85	14	69	43	0	0	56	0.99
117032--117077	19	2.2	22	88	11	71	43	0	0	56	0.99
117033--117083	26	1.9	26	88	4	75	43	0	0	56	0.99
117650--117701	21	2.7	20	78	18	56	50	3	3	42	1.39
117826--117867	17	2.4	17	81	14	50	57	0	2	40	1.12
117907--117955	22	2.2	22	78	7	55	48	2	0	48	1.12
118268--118702	181	2.4	177	79	3	433	40	10	8	41	1.70
119649--119682	13	2.5	13	90	4	50	50	2	0	47	1.16
121902--121959	11	5.1	11	83	6	53	51	1	0	46	1.11
122864--122901	19	2.1	19	90	9	62	44	0	0	55	0.99
123786--123847	32	1.9	32	83	6	81	41	0	1	56	1.09
123897--123950	13	4.3	12	83	6	63	61	1	0	37	1.07
123897--123950	25	2.2	25	83	6	65	61	1	0	37	1.07
124833--124881	17	2.8	18	84	9	50	48	0	0	51	1.00
124833--124869	17	2.2	17	90	0	56	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124991--125054	18	3.8	18	74	19	57	54	1	1	42	1.19
125245--125294	26	1.9	26	84	8	66	46	0	4	50	1.20
125725--125760	18	2.0	18	88	0	54	50	5	13	30	1.65
127011--127076	18	3.5	18	69	17	53	48	0	3	48	1.17
127236--127292	23	2.5	22	83	5	69	52	1	1	43	1.21
127497--127558	25	2.6	23	82	15	72	48	0	1	50	1.10
127513--127557	22	2.0	21	87	12	63	48	0	2	48	1.13
127748--127781	16	2.2	15	89	5	50	61	2	2	32	1.26
127774--127900	48	2.6	47	75	14	121	48	0	4	46	1.23
127820--127878	23	2.6	23	78	8	66	45	0	3	50	1.18
127820--127931	10	11.4	10	66	27	53	46	0	2	50	1.15
127774--127951	8	22.1	8	68	24	83	48	0	3	47	1.20
127980--128100	24	4.9	27	65	26	72	56	0	0	42	1.11
128122--128157	19	1.9	19	88	5	56	38	11	8	41	1.71
128220--128297	26	3.0	25	72	10	68	47	1	3	47	1.28
129092--129126	11	3.1	11	88	8	52	65	0	0	34	0.93
129235--129308	18	3.9	18	73	13	58	47	1	1	50	1.18
129799--129848	25	2.0	24	84	3	64	40	2	2	56	1.22
129850--129909	21	3.0	20	72	13	59	41	3	1	53	1.27
129885--129917	16	2.1	15	94	5	57	42	0	0	57	0.98
131767--131832	23	2.9	23	73	10	64	46	3	4	45	1.38
131814--131854	17	2.6	15	81	11	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132378--132421	16	2.8	16	82	6	54	56	4	0	38	1.20
132567--132611	15	2.8	16	87	12	58	48	0	0	51	1.00
132903--132958	21	2.7	21	72	2	51	44	3	0	51	1.18
133673--134251	182	3.2	179	76	8	466	40	9	9	40	1.70
133985--134502	274	1.9	274	80	5	609	39	8	8	42	1.66
134247--134815	180	3.2	177	80	4	590	39	7	9	42	1.66
134748--134912	89	1.9	87	87	7	246	38	6	6	47	1.56
134841--137060	181	12.2	181	73	10	1252	40	8	9	41	1.68
137219--137278	23	2.5	24	77	15	63	58	0	0	41	0.98
137216--137288	32	2.4	31	84	9	87	56	1	1	41	1.16
137223--137276	15	3.5	15	79	18	65	59	0	0	40	0.98
137223--137288	17	4.1	16	74	18	57	56	1	1	40	1.18
137765--137812	14	3.4	14	82	2	60	47	4	0	47	1.21
138206--138304	28	3.6	26	73	18	76	44	3	2	50	1.28
138247--138299	18	2.9	18	75	11	54	45	1	0	52	1.11

Tables:   1   2

The End!