genome.fa.s605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168430.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_643, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20873

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
789--1180	181	2.2	184	83	4	492	37	8	10	43	1.70
1210--2866	181	9.2	181	76	5	1124	40	7	9	41	1.67
1274--4459	362	8.9	358	72	9	866	40	8	9	41	1.68
2883--4609	538	3.2	534	80	6	1650	40	8	9	41	1.68
2875--4607	181	9.6	179	75	8	1011	40	8	9	41	1.68
4491--4741	135	1.9	133	83	8	328	37	7	10	44	1.69
4886--5286	181	2.2	181	80	3	441	42	10	9	36	1.73
5186--5380	98	2.0	98	83	6	243	43	6	10	40	1.65
5007--5557	275	2.0	280	82	4	679	42	8	9	39	1.68
5283--6780	181	8.3	181	77	6	1174	40	7	9	43	1.65
5805--5858	23	2.3	23	84	12	65	38	0	5	55	1.23
6985--7047	31	2.0	31	96	0	117	44	6	7	41	1.59
7070--7539	185	2.6	182	80	7	497	40	7	10	40	1.68
8496--12938	180	24.9	174	73	11	1839	39	7	9	42	1.67
8610--12062	181	19.4	176	72	12	748	39	7	9	42	1.68
8872--9191	165	1.9	166	83	5	416	39	8	8	43	1.66
9037--12860	181	21.3	179	75	7	1912	39	8	9	42	1.68
9070--12860	361	10.6	362	74	7	2490	39	7	9	42	1.67
9070--12858	180	21.2	180	75	7	2407	39	7	9	42	1.67
12163--13904	956	1.8	959	78	8	1973	41	8	9	41	1.66
12951--13983	179	5.7	177	74	12	682	39	8	9	42	1.68
13079--13970	356	2.5	358	77	9	807	39	8	9	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14418--14468	18	2.9	18	71	14	52	49	9	3	37	1.55
13983--19174	180	28.8	179	72	11	2820	41	8	9	41	1.66
14731--16402	712	2.3	712	79	7	1615	41	8	8	40	1.67
14012--19157	182	28.6	177	72	11	2362	41	8	9	41	1.66
18357--19008	179	3.6	176	81	9	567	40	8	9	40	1.69
20352--20452	27	3.6	28	71	21	88	46	1	2	48	1.28
20397--20451	25	2.2	26	83	3	67	47	0	3	49	1.19
20366--20438	18	4.1	19	70	22	61	47	1	4	46	1.30
20444--20498	22	2.6	21	76	18	60	54	1	0	43	1.10
20469--20517	16	3.2	16	75	24	52	55	0	0	44	0.99

Tables:   1

The End!