genome.fa.s609.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168434.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_647, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20776

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112--169	21	2.8	20	76	7	62	20	20	29	29	1.98
2402--5885	181	19.5	181	75	7	2445	41	9	8	40	1.68
2490--5831	177	18.7	174	73	10	1090	41	9	8	40	1.68
5744--6008	146	1.8	146	90	3	435	43	10	6	39	1.65
5873--13404	181	42.2	180	74	9	3346	41	9	8	40	1.68
5873--15227	359	26.3	356	74	9	5055	41	9	8	40	1.68
2361--15271	539	24.2	536	74	9	5898	41	9	8	40	1.68
5873--15227	711	13.1	708	72	11	3710	41	9	8	40	1.68
7874--15276	181	41.5	176	73	9	4032	41	9	8	40	1.68
12097--12129	17	2.0	17	88	5	50	39	12	0	48	1.40
13279--13583	158	1.9	159	83	2	389	43	9	9	37	1.70
15486--17186	180	9.5	179	73	9	766	41	10	7	40	1.68
16583--16942	177	2.0	180	82	6	437	42	9	7	40	1.64
15515--17167	718	2.3	708	79	7	1582	41	10	7	40	1.68
17133--17304	87	2.0	87	86	4	240	47	6	6	39	1.56
17964--17997	15	2.3	15	89	0	50	67	0	2	29	1.05
18019--18071	17	3.0	18	73	15	56	35	9	9	45	1.69
17291--19332	181	11.4	178	74	9	1375	40	10	8	40	1.69
17376--19332	361	5.4	359	75	9	1489	41	10	8	40	1.69
19284--19378	49	1.9	49	93	0	163	30	10	8	50	1.66
19601--19969	181	2.1	177	80	10	394	41	9	5	43	1.61
19699--20308	314	1.9	314	83	5	788	41	10	6	41	1.65

Tables:   1

The End!