genome.fa.s61.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167886.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64300

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131--715	180	3.2	180	79	6	630	38	8	10	41	1.71
554--975	164	2.5	165	77	7	469	39	7	10	42	1.68
554--1232	169	4.0	167	73	10	477	40	8	10	41	1.69
1604--4910	181	18.5	178	74	9	2085	40	7	9	42	1.66
2793--2826	17	1.9	18	88	5	52	47	5	14	32	1.69
3042--3359	174	1.8	178	81	5	405	42	8	9	39	1.68
4375--4421	18	2.7	18	86	3	60	46	2	12	38	1.54
4440--4910	180	2.6	180	80	4	468	39	8	8	43	1.66
3935--5630	706	2.4	687	77	9	1609	40	7	9	42	1.67
4915--11137	362	17.2	359	72	10	3408	40	8	9	41	1.67
4915--11137	180	34.4	178	71	11	2602	40	8	9	41	1.67
6141--6173	18	1.9	17	88	11	50	48	0	9	42	1.35
4915--11137	894	6.9	896	71	11	2203	40	8	9	41	1.67
11695--11727	18	1.9	17	88	11	50	48	6	6	39	1.53
11479--11813	174	1.9	174	82	3	415	39	8	9	42	1.68
11933--13341	181	7.9	180	78	7	1180	40	8	10	40	1.70
12198--13335	538	2.1	534	79	7	1259	40	8	10	40	1.69
11934--13332	358	3.9	357	77	7	1263	40	8	10	40	1.70
15246--15291	25	1.9	23	82	8	56	30	19	17	32	1.95
21705--21838	67	2.0	67	97	0	250	30	27	20	21	1.98
26959--38164	181	62.0	177	70	12	3169	40	8	9	41	1.69
27864--27900	16	2.3	16	90	9	58	43	8	13	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27901--28580	176	3.8	179	80	5	693	41	8	9	40	1.68
27020--30163	522	5.9	522	76	9	1928	40	7	9	41	1.68
29032--29722	363	1.9	361	79	5	768	40	6	10	41	1.66
30279--38170	181	43.7	181	72	10	3932	40	8	9	41	1.69
30881--31015	65	2.0	67	82	2	166	39	10	11	38	1.76
32437--34546	892	2.4	889	78	7	1972	40	9	10	40	1.70
33155--36350	540	5.8	534	70	14	1534	40	9	10	40	1.70
35343--38170	360	7.9	357	75	7	1932	40	8	9	41	1.68
35349--38170	541	5.2	533	75	7	2014	40	8	9	41	1.68
38387--38443	27	2.1	27	90	0	87	36	8	8	45	1.66
38440--38750	165	1.9	166	81	3	385	44	9	6	38	1.64
38605--41392	181	15.5	181	75	6	2012	41	9	8	39	1.68
38658--41392	715	3.8	712	76	8	1744	41	9	8	40	1.68
38760--41392	534	4.9	527	75	9	1991	41	9	8	40	1.68
40910--41881	489	2.0	491	84	3	1260	41	10	8	39	1.70
41389--45845	358	12.5	356	70	12	1138	41	10	8	39	1.69
41389--42585	181	6.7	176	76	7	999	40	10	8	39	1.71
42600--45884	181	18.3	178	76	7	2327	41	10	8	39	1.69
42600--45884	539	6.1	543	78	6	2648	41	10	8	39	1.69
45838--45870	18	1.9	17	88	11	50	42	6	3	48	1.43
46429--46460	16	2.0	17	88	11	50	6	15	18	59	1.57
47768--51396	181	20.2	180	74	8	1472	39	8	10	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47759--51397	358	10.1	355	73	9	2157	39	8	10	41	1.68
47814--57520	721	13.6	712	72	11	4204	39	8	10	41	1.69
51548--57586	181	33.6	179	76	6	4515	39	8	10	41	1.70
57592--57980	181	2.1	181	79	3	415	41	8	8	40	1.68
58168--60083	181	10.6	180	74	10	1189	40	9	9	40	1.70
58891--60064	356	3.3	355	76	8	1057	41	8	9	40	1.69
60384--60413	15	2.0	15	93	0	51	43	40	0	16	1.48
60785--60819	18	1.9	18	88	0	52	25	8	17	48	1.75
60647--61404	199	3.8	198	77	6	646	35	12	11	41	1.79
61902--62284	177	2.1	177	79	4	412	38	6	10	44	1.65
62933--63265	177	1.9	180	79	6	390	40	6	9	44	1.62
61884--64300	487	5.0	488	93	3	4159	40	7	9	42	1.65

Tables:   1

The End!