genome.fa.s612.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168437.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_65, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135677

Tables:   1   2   

This is table  2  of  2  ( 218 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67046--67176	60	2.2	61	87	8	196	37	12	4	45	1.62
67193--67254	5	11.8	5	77	16	56	79	0	3	17	0.87
67187--67221	14	2.5	14	90	9	54	77	0	2	20	0.90
67193--67255	6	10.7	6	70	16	51	79	0	3	17	0.86
67188--67234	14	3.5	13	82	14	51	76	0	4	19	0.95
67192--67255	34	1.9	32	90	6	101	78	0	4	17	0.92
67279--67330	19	2.8	19	83	11	65	71	7	0	21	1.11
67275--67343	11	6.1	11	73	18	52	71	5	0	23	1.08
67302--67343	12	3.7	12	85	14	54	76	0	0	23	0.79
67302--67352	24	2.1	24	85	7	68	78	0	1	19	0.85
67594--67635	22	1.9	22	85	0	57	0	47	0	52	1.00
67860--67889	14	2.1	15	93	6	53	66	13	0	20	1.24
67880--67931	26	2.2	23	83	13	61	78	7	0	13	0.94
67901--67949	14	3.4	14	78	13	55	81	6	4	8	0.97
67850--67927	33	2.3	34	82	6	97	71	11	1	15	1.20
67891--67949	28	2.1	29	84	9	79	79	6	3	10	1.03
69872--69913	13	3.3	13	84	15	61	45	0	0	54	0.99
71698--71727	6	4.8	6	92	8	51	16	0	0	83	0.65
71698--71727	13	2.4	13	94	5	53	16	0	0	83	0.65
71789--71842	24	2.2	24	81	12	65	33	1	3	61	1.25
76882--77191	56	5.4	57	78	5	277	36	14	8	40	1.76
76882--77144	57	4.6	58	78	5	264	36	15	7	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79268--79328	1	61.0	1	76	0	59	3	0	8	88	0.61
79269--79328	8	7.5	8	83	9	70	3	0	8	88	0.62
79268--79328	9	6.9	9	80	17	74	3	0	8	88	0.61
79335--79507	41	4.2	42	94	2	305	34	24	18	23	1.96
79335--79507	83	2.1	83	94	2	303	34	24	18	23	1.96
79481--79533	26	2.0	26	100	0	106	30	20	18	30	1.97
79439--79574	68	2.0	68	98	0	263	34	22	18	25	1.96
79507--79657	42	3.6	42	92	1	268	35	21	17	24	1.95
79357--79657	151	2.0	150	95	1	541	35	22	18	24	1.96
80910--80954	12	3.5	12	85	11	54	2	11	0	86	0.65
85222--85246	10	2.5	10	100	0	50	92	0	0	8	0.40
85277--85579	56	5.3	57	79	7	281	37	14	7	40	1.74
85330--85579	113	2.2	115	82	5	292	37	14	8	40	1.75
87808--87916	55	2.0	55	85	1	148	48	7	6	37	1.57
89805--89835	2	15.5	2	100	0	62	51	0	0	48	1.00
90414--90458	24	1.9	24	95	4	83	42	4	4	48	1.43
91046--91079	16	2.1	16	94	0	59	17	26	29	26	1.98
92796--92829	18	1.9	17	93	0	50	11	14	0	73	1.10
93270--93306	19	1.9	19	88	0	56	37	10	0	51	1.37
93388--93463	27	2.9	25	70	14	64	64	0	2	32	1.07
93426--93484	20	2.7	22	84	15	86	61	0	0	38	0.96
93426--93491	20	3.2	21	85	12	84	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93461--93524	28	2.3	28	89	5	94	50	0	0	50	1.00
93562--93625	32	2.0	32	84	0	83	57	1	4	35	1.29
93594--93627	18	1.9	18	88	5	52	61	0	5	32	1.20
93615--93674	20	2.9	21	87	12	88	60	0	0	40	0.97
93639--93699	28	2.1	28	82	8	70	59	0	0	40	0.98
93649--93712	28	2.3	27	89	10	94	50	0	0	50	1.00
93362--93742	188	2.0	189	97	0	719	51	1	3	43	1.28
94814--95618	357	2.3	356	85	3	1057	36	11	15	36	1.84
100144--100188	22	2.0	22	100	0	90	22	17	8	51	1.73
100370--100527	78	2.0	78	97	0	298	32	15	17	34	1.91
102947--102985	20	1.9	19	85	10	51	38	0	2	58	1.12
104098--104250	56	2.6	55	83	9	189	33	12	6	47	1.67
104098--104273	56	3.1	56	77	10	185	34	10	6	48	1.63
104291--104339	20	2.4	21	83	10	57	77	2	6	14	1.05
104753--104803	20	2.5	20	77	0	66	37	19	17	25	1.94
105417--105455	15	2.5	16	88	12	55	56	5	2	35	1.35
105729--105811	1	83.0	1	78	0	85	0	0	10	89	0.50
105729--105810	8	10.6	8	83	13	102	0	0	10	89	0.50
105730--105811	24	3.5	22	88	9	119	0	0	10	89	0.50
105818--106267	123	3.7	123	88	0	648	36	20	19	23	1.95
105818--106267	41	11.0	41	87	1	589	36	20	19	23	1.95
107519--107588	28	2.5	28	84	6	90	8	17	0	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107549--107586	17	2.2	16	90	9	58	10	15	0	73	1.09
111476--111757	114	2.4	122	82	8	348	33	12	7	46	1.70
111476--111756	59	4.7	59	85	7	322	33	12	7	46	1.70
111795--111832	19	2.1	19	85	5	51	76	0	7	15	1.01
115789--115836	24	2.0	23	84	15	62	20	2	2	75	1.02
115795--115834	17	2.4	17	86	0	53	22	2	0	75	0.93
116268--116312	17	2.8	16	80	9	56	77	0	4	17	0.92
116850--116901	19	2.8	19	79	2	61	51	3	0	44	1.19
116983--117015	17	2.0	17	88	5	50	48	0	12	39	1.40
121037--121369	144	2.3	146	93	2	566	28	24	15	32	1.95
123492--123562	34	2.1	34	83	2	88	33	7	12	46	1.69
128283--128333	16	3.4	16	74	17	56	33	3	9	52	1.53
128286--128343	28	2.1	28	90	0	89	39	3	10	46	1.55
128235--128401	86	1.9	86	96	2	309	39	10	7	42	1.68
128313--128429	58	2.0	58	93	1	200	37	12	6	42	1.70
128276--128393	28	4.1	27	66	25	64	39	9	6	44	1.63
128455--128506	24	2.2	24	79	6	52	76	0	0	23	0.78
129340--129407	21	3.3	20	73	19	68	64	0	7	27	1.20
129324--129403	41	2.0	41	82	9	101	65	2	7	25	1.32
129340--129412	20	3.5	20	76	12	76	64	0	6	28	1.19
129370--129565	4	48.8	4	66	18	70	67	3	3	26	1.22
129432--129557	33	3.8	33	73	16	93	69	2	3	25	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129365--129565	22	8.7	22	69	16	79	67	3	3	25	1.22
129478--129566	29	3.0	30	84	9	96	74	3	1	21	1.03
129504--129567	21	3.0	21	86	6	76	76	1	0	21	0.87
129744--130064	42	7.5	42	83	8	339	41	20	13	23	1.88
129744--130045	130	2.3	132	87	4	418	42	20	12	24	1.87
129743--129993	88	2.9	85	84	3	322	42	20	12	23	1.87
131066--131137	13	5.2	15	76	17	75	8	13	0	77	0.98
131089--131134	8	6.6	7	82	12	51	6	13	0	80	0.89
131081--131137	13	4.4	13	89	6	89	7	12	0	80	0.89
131064--131137	27	2.7	26	89	8	112	8	14	0	77	0.99

Tables:   1   2

The End!