genome.fa.s625.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168450.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_661, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20344

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130--714	181	3.2	178	77	6	588	38	8	10	42	1.71
572--972	164	2.4	166	84	4	470	38	8	8	44	1.67
563--1052	164	2.9	169	80	8	418	39	8	9	42	1.68
1143--1468	179	1.8	179	81	6	403	38	8	10	42	1.70
1603--3140	180	8.6	181	78	6	1325	41	8	8	41	1.66
2787--2820	17	1.9	18	88	5	52	47	5	14	32	1.69
1779--3140	352	3.8	350	78	7	1193	41	8	8	41	1.65
3146--4859	180	9.7	178	73	10	880	39	7	10	42	1.67
4037--4342	166	1.8	167	84	4	422	39	6	10	43	1.65
4387--4858	182	2.6	179	78	5	450	38	9	8	43	1.67
4557--5196	321	2.0	325	80	4	731	39	8	9	42	1.68
4863--6626	181	9.9	180	75	8	1336	41	7	8	42	1.64
6744--6965	119	1.9	119	85	3	313	32	13	8	45	1.73
6843--12043	181	28.8	181	75	7	3773	41	9	8	40	1.69
8297--8620	171	1.9	171	82	5	404	39	10	9	41	1.72
6863--17360	362	29.1	359	70	12	4683	41	9	8	40	1.68
11861--11898	20	1.9	20	88	0	58	60	0	7	31	1.25
12157--12552	181	2.2	178	80	6	426	42	9	7	40	1.65
12587--13398	181	4.5	178	78	6	584	40	9	8	41	1.68
13253--13561	163	1.9	162	81	3	379	40	10	7	41	1.66
13471--13815	174	2.0	174	81	6	414	41	9	7	41	1.65
13855--14362	182	2.8	181	79	6	448	43	8	7	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12817--15424	522	5.0	520	75	9	1574	41	9	8	40	1.67
14017--15063	341	3.0	341	79	6	849	41	9	8	40	1.67
14216--14522	160	1.9	160	83	2	402	42	8	7	41	1.63
14358--17288	181	16.3	181	74	8	1791	41	9	8	40	1.68
14376--17286	361	8.1	360	73	9	1876	41	9	8	40	1.68
15463--15828	176	2.1	177	80	5	420	42	10	8	37	1.70
17243--17493	133	1.9	133	86	1	360	43	8	7	39	1.64
17367--18249	179	4.9	178	75	7	504	39	9	8	41	1.69
16702--17952	672	1.9	671	81	6	1559	41	9	7	41	1.66
17367--18306	357	2.6	354	76	7	792	40	9	8	41	1.68
18963--19342	182	2.1	183	82	6	457	41	10	9	38	1.71
19374--19482	16	6.4	16	79	12	119	37	16	2	43	1.63
19383--19482	35	2.9	35	84	3	139	36	18	3	43	1.65
19465--20324	180	4.8	177	75	10	657	43	9	6	39	1.64

Tables:   1

The End!