genome.fa.s648.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168473.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_72, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126912

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835--874	13	2.9	14	81	11	55	45	0	0	55	0.99
1153--1200	24	2.0	23	84	4	60	58	4	0	37	1.18
1412--1456	16	2.8	17	80	9	51	53	0	0	46	1.00
1429--1519	20	3.8	24	71	18	75	53	0	1	45	1.07
1419--1470	19	2.9	18	78	18	63	48	0	0	51	1.00
2356--2398	11	3.8	11	81	6	59	41	0	0	58	0.98
2358--2422	23	2.9	23	79	6	71	46	0	1	52	1.10
2461--2511	14	3.6	14	79	12	52	50	0	0	49	1.00
2434--2511	27	2.9	27	79	11	79	50	1	0	48	1.09
2813--2851	21	1.9	20	89	5	60	46	5	0	48	1.24
3180--3243	19	3.1	21	78	17	64	43	0	3	53	1.16
3216--3302	33	2.6	33	79	15	90	50	2	2	44	1.27
3714--3760	23	2.0	23	83	0	58	51	6	4	38	1.47
4084--4121	20	1.9	20	89	10	60	47	2	5	44	1.39
4301--4357	23	2.6	22	78	13	64	45	1	1	50	1.22
4449--4487	19	2.1	19	85	9	53	56	2	0	41	1.13
5100--5159	26	2.4	25	83	8	77	53	0	3	43	1.17
6273--6319	24	2.0	23	83	4	58	44	2	0	53	1.12
6795--6839	24	2.0	24	86	8	67	48	0	0	51	1.00
6831--6875	23	2.0	23	82	8	56	48	4	0	46	1.22
7644--7673	13	2.3	13	94	0	51	50	0	0	50	1.00
7768--7824	12	4.7	11	75	16	51	49	0	1	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7768--7824	24	2.3	25	84	3	80	49	0	1	49	1.11
7741--7824	40	2.2	37	85	10	107	45	0	3	51	1.18
7751--7856	39	2.7	38	82	11	108	46	1	2	49	1.27
7936--8004	26	2.6	25	80	13	77	53	1	1	43	1.18
8103--8141	18	2.2	18	86	9	53	48	0	2	48	1.15
8080--8164	41	2.0	41	82	10	102	48	0	2	49	1.14
8133--8198	34	2.0	34	83	13	86	45	3	1	50	1.26
8188--8244	10	6.3	9	74	13	55	45	0	0	54	0.99
8086--8243	19	8.6	19	66	23	56	46	1	1	51	1.17
8743--8785	18	2.4	19	80	7	54	58	0	0	41	0.98
8877--8918	12	3.5	12	83	6	50	45	0	0	54	0.99
9140--9226	34	2.6	35	78	14	94	52	1	0	45	1.08
9115--9216	8	12.5	8	68	23	54	50	0	0	48	1.07
9115--9216	19	6.2	16	70	22	54	50	0	0	48	1.07
9608--9716	14	8.5	14	72	18	71	49	0	0	49	1.07
9611--9650	7	5.7	7	91	8	64	45	0	0	55	0.99
11534--11572	6	6.7	6	82	5	53	48	2	2	46	1.29
11534--11573	17	2.3	17	86	4	53	50	2	2	45	1.28
12463--12505	13	3.2	13	81	12	50	41	0	4	53	1.21
13259--13355	24	4.3	23	70	22	64	52	2	0	45	1.12
13295--13409	55	2.0	58	80	8	130	53	2	0	43	1.14
13324--13372	23	2.3	22	86	10	66	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13382--13425	21	2.1	21	83	8	54	52	2	2	43	1.26
13696--13744	9	5.7	9	80	9	57	57	0	0	42	0.99
14075--14159	22	3.8	22	78	3	89	45	8	10	35	1.69
14103--14152	23	2.2	22	89	3	73	44	10	12	34	1.75
14070--14165	45	2.1	45	80	5	113	44	9	9	36	1.69
14313--14433	44	2.7	43	77	7	127	45	8	6	39	1.60
14318--14462	22	6.6	22	75	9	98	47	9	5	37	1.60
14318--14461	66	2.2	65	78	14	152	47	9	5	37	1.58
19385--19535	75	2.0	75	94	0	266	47	13	7	31	1.71
19385--19504	36	3.2	36	72	15	109	45	15	6	32	1.71
19402--19536	40	3.5	39	76	10	143	46	12	7	33	1.70
42558--42598	21	1.9	22	85	5	57	24	14	26	34	1.94
42749--42792	21	2.0	22	86	4	63	20	4	11	63	1.44
43854--56728	477	27.0	479	84	3	15742	30	12	17	39	1.87
56529--56966	241	1.8	244	81	6	559	34	12	15	37	1.84
56775--61599	478	10.1	480	84	2	5953	30	12	17	39	1.87
61421--61775	179	2.0	179	86	0	503	30	12	18	38	1.87
63072--63493	211	2.0	211	86	5	586	31	12	19	36	1.89
64981--75851	479	22.7	477	75	10	7076	30	12	17	39	1.87
70432--70753	160	2.0	160	91	0	527	30	13	15	41	1.85
70592--75858	480	11.0	480	86	2	6632	31	12	16	39	1.86
96870--96949	8	9.5	8	71	15	54	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96893--96948	21	2.7	21	83	8	71	51	0	0	48	1.00
96883--96939	28	1.9	31	82	10	75	50	0	0	49	1.00
97027--97077	16	3.5	15	79	10	61	41	5	0	52	1.25
97108--97149	21	1.9	23	85	9	61	52	0	2	45	1.13
97835--97875	17	2.3	18	87	8	57	39	4	0	56	1.21
97901--97932	16	1.9	17	93	6	57	50	6	0	43	1.27
98531--98568	6	6.3	6	82	11	51	50	0	2	47	1.15
98827--98883	18	3.1	20	74	23	54	56	0	0	43	0.99
98920--98962	19	2.2	20	91	4	70	46	4	0	48	1.22
99125--99242	27	4.3	28	72	22	81	52	0	0	45	1.12
99151--99231	28	3.0	26	73	18	67	55	0	1	43	1.07
99332--99383	21	2.3	23	77	19	63	50	3	7	38	1.50
99341--99384	21	2.1	21	95	0	79	47	4	6	40	1.50
99449--99505	26	2.3	24	80	19	64	47	1	1	49	1.22
99725--99769	15	3.1	15	82	14	51	55	0	0	44	0.99
99855--99912	23	2.6	23	81	10	66	50	1	1	46	1.22
99966--100047	37	2.2	36	80	16	89	48	1	1	48	1.17
99991--100050	26	2.3	27	80	8	70	50	1	0	48	1.11
100108--100154	14	3.2	15	82	11	53	55	2	0	42	1.12
100349--100395	18	2.6	18	81	15	53	40	0	2	57	1.11
100530--100555	11	2.4	11	100	0	52	61	0	0	38	0.96
101043--101107	16	4.1	16	79	16	66	52	0	3	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101043--101107	32	2.1	31	88	8	96	52	0	3	44	1.16
101508--101565	24	2.3	24	82	11	64	43	1	1	53	1.21
101648--101707	24	2.7	22	80	12	68	58	0	1	40	1.08
102292--102368	12	6.6	12	70	20	56	50	2	2	44	1.29
102735--104213	479	3.1	478	84	3	1871	32	11	15	39	1.84

Tables:   1

The End!