genome.fa.s655.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168480.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_79, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117042

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12060--13708	179	9.2	179	75	10	1092	41	9	8	40	1.69
13226--13269	18	2.5	19	82	13	51	59	2	0	38	1.10
12360--13678	354	3.7	347	76	10	1055	42	9	8	39	1.68
13936--13990	20	2.8	20	73	24	55	40	9	5	45	1.59
13980--14412	181	2.4	179	81	6	496	44	9	5	40	1.60
14738--15028	160	1.8	160	80	4	354	38	8	7	45	1.63
14896--26861	181	66.2	180	70	12	3991	40	8	9	41	1.68
16050--16364	166	1.9	166	83	2	409	40	8	10	40	1.70
18200--18512	173	1.8	173	81	4	398	40	7	10	41	1.67
20151--20272	62	2.0	62	96	0	226	37	7	5	49	1.55
19814--20635	425	1.9	421	79	5	897	41	7	8	41	1.65
21793--26861	180	28.3	176	74	9	2999	40	8	9	41	1.68
21793--26861	361	14.1	360	75	8	3531	40	8	9	41	1.68
27020--28105	353	3.1	348	75	10	814	39	7	10	41	1.68
26928--28149	177	6.9	175	75	9	858	40	7	10	41	1.69
29158--30859	181	9.5	180	78	7	1304	40	9	7	41	1.68
30734--31012	153	1.8	153	82	7	361	38	11	8	41	1.72
30885--37581	181	37.3	180	71	12	2606	41	9	8	39	1.69
31621--31694	16	4.7	15	74	22	55	37	8	5	48	1.56
32029--32061	17	2.0	17	88	5	50	39	9	0	51	1.34
31656--37581	181	33.3	181	73	10	3556	41	9	8	40	1.69
33163--33527	191	1.9	192	79	7	416	43	9	8	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33359--36799	528	6.5	519	74	11	1700	41	9	8	39	1.68
38717--39059	176	1.9	178	80	5	401	41	9	9	39	1.71
37584--40444	361	8.0	360	75	8	1967	41	10	8	40	1.69
37584--40452	542	5.3	539	74	8	2109	41	10	8	40	1.69
37582--40445	181	16.0	180	75	7	2001	41	10	8	40	1.69
40445--45020	181	25.2	180	71	11	1897	41	9	8	40	1.68
40459--45064	536	8.4	533	71	13	2266	41	9	8	40	1.69
42679--53305	540	19.7	536	70	12	3207	41	9	8	40	1.68
42679--53305	359	29.5	359	70	12	4052	41	9	8	40	1.68
45062--46574	181	8.4	179	76	6	972	43	10	7	38	1.68
45062--46570	362	4.2	360	77	6	1215	43	10	7	38	1.68
46594--52847	181	35.0	180	75	7	4313	41	9	8	40	1.68
48167--48203	18	2.2	17	90	9	58	43	5	8	43	1.57
45062--52847	721	10.9	715	75	8	5090	41	9	8	40	1.68
46725--52847	361	17.1	355	73	9	2322	41	9	8	40	1.68
51209--51241	17	2.0	17	88	5	50	39	12	0	48	1.40
51547--52849	180	7.2	180	77	5	1084	41	9	8	39	1.69
51644--52846	356	3.3	360	76	7	890	42	9	8	39	1.68
52688--53005	158	2.0	159	80	4	365	45	8	7	37	1.64
53327--53998	177	3.7	180	78	7	656	41	7	9	41	1.64
53929--54065	67	2.1	67	87	1	195	41	8	11	37	1.73
54025--55618	528	3.0	523	78	7	1561	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53995--55670	181	9.4	180	76	8	1300	40	8	10	41	1.69
68478--70969	181	13.9	181	78	5	2132	40	8	10	41	1.70
69981--70013	16	2.0	17	88	5	50	42	3	15	39	1.62
68493--70969	361	6.9	362	78	5	2171	39	8	10	41	1.70
68478--70965	542	4.6	537	80	5	2352	40	8	10	41	1.70
78919--80459	181	8.6	180	78	3	1391	39	9	9	41	1.70
80522--110275	181	163.6	180	69	13	7795	41	10	8	40	1.68
80485--110275	540	55.3	538	70	12	9071	41	10	8	40	1.68
84156--84414	137	1.9	137	81	6	319	42	11	5	40	1.65
83797--84778	494	2.0	486	83	5	1172	42	10	8	38	1.70
84288--110293	181	143.4	181	70	12	9061	41	9	8	40	1.68
87613--87754	71	2.0	71	95	2	259	50	7	7	34	1.58
87737--97897	180	56.7	181	72	10	3972	41	9	8	40	1.68
89382--89688	169	1.8	168	83	4	413	41	9	6	42	1.61
93621--93675	18	3.1	18	76	12	60	43	10	5	40	1.63
90663--110275	360	54.0	360	69	13	5903	41	10	8	40	1.68
98493--98979	158	3.0	155	74	15	413	42	9	7	40	1.66
102189--102224	16	2.1	17	90	10	56	41	5	8	44	1.58
103352--106285	719	4.1	712	76	8	1993	40	10	8	40	1.69
106020--106571	286	1.9	284	82	6	688	38	10	8	42	1.70
107753--110293	359	7.1	357	75	8	1700	41	10	7	39	1.68
109763--109791	3	10.0	3	92	7	51	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109586--109971	192	2.0	188	81	5	438	42	10	7	38	1.69
109452--110149	369	1.9	362	79	8	788	41	11	8	38	1.71

Tables:   1

The End!