genome.fa.s660.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168485.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_83, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108394

Tables:   1   2   

This is table  1  of  2  ( 121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2012--2063	26	2.0	26	92	0	86	26	19	26	26	1.99
1801--2164	184	2.0	184	80	3	410	25	27	25	21	1.99
2943--2995	26	2.0	26	85	0	70	30	20	22	26	1.98
3297--3349	26	2.0	26	88	0	79	24	18	26	30	1.98
2581--3423	355	2.4	354	81	2	978	25	27	26	20	1.99
3834--3984	45	3.4	45	77	0	149	21	30	28	19	1.98
4598--4641	12	3.7	12	84	0	61	13	38	20	27	1.90
4670--4741	26	2.8	26	97	0	135	23	19	30	26	1.98
10628--10680	26	2.0	26	96	0	97	24	20	28	26	1.99
13213--13262	26	1.9	26	88	8	75	32	16	24	28	1.96
13566--13615	26	1.9	26	87	0	73	26	16	28	30	1.96
14484--14508	13	1.9	13	100	0	50	24	16	36	24	1.94
14551--14708	45	3.5	44	81	6	174	16	32	32	17	1.93
15480--15532	26	2.0	26	92	0	88	24	18	28	28	1.98
15604--15692	45	2.0	45	82	4	108	17	29	32	20	1.96
16149--16200	26	2.0	26	88	0	77	28	21	23	26	1.99
16470--16548	26	3.0	26	88	3	124	26	21	25	26	1.99
17731--17781	26	2.0	26	88	0	75	27	17	25	29	1.98
18656--18680	13	1.9	13	100	0	50	24	16	36	24	1.94
18679--18919	90	2.7	89	78	7	227	17	31	28	21	1.97
18683--18925	45	5.4	43	75	5	162	18	31	28	21	1.97
18717--18930	45	4.8	45	76	5	173	18	31	29	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19368--19420	26	2.0	26	96	0	97	26	18	26	28	1.98
20393--20561	45	3.8	44	73	3	149	18	30	29	21	1.97
21002--21054	26	2.0	26	88	0	79	28	16	26	28	1.97
26698--27324	333	1.9	333	84	0	851	23	28	26	21	1.99
27073--27125	26	2.0	26	96	0	97	26	15	26	32	1.95
27098--27393	159	1.9	159	78	7	332	22	28	28	20	1.99
27429--27480	26	2.0	26	88	0	77	28	19	25	26	1.98
28344--28399	23	2.4	23	93	0	94	25	17	35	21	1.95
29047--29099	26	2.0	26	96	0	97	24	18	26	30	1.98
28898--29347	174	2.6	173	81	4	478	26	24	27	21	1.99
29221--29273	26	2.0	26	85	0	70	30	16	26	26	1.97
29576--29654	26	3.0	26	86	0	104	26	18	25	29	1.98
29586--29657	26	2.8	26	89	0	108	26	18	26	29	1.98
29974--30219	45	5.5	45	72	8	153	21	31	26	21	1.98
30506--30810	159	1.9	158	85	5	420	24	30	26	18	1.98
32149--32273	45	2.8	44	72	2	106	19	32	27	20	1.97
32804--32856	26	2.0	26	96	0	97	26	18	26	28	1.98
33157--33209	26	2.0	26	92	0	88	26	20	26	26	1.99
32988--33364	194	1.9	194	81	4	436	23	28	27	20	1.99
33456--33508	26	2.0	26	96	0	97	28	20	24	26	1.99
33814--33866	26	2.0	26	85	0	70	26	18	26	28	1.98
34015--34138	45	2.8	44	75	4	131	16	29	33	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34628--34681	26	2.1	26	89	6	83	27	20	25	25	1.99
35611--35765	45	3.4	45	79	0	184	18	31	29	20	1.96
36205--36257	26	2.0	26	88	0	79	26	18	26	28	1.98
36526--36578	26	2.0	26	92	0	88	26	16	26	30	1.97
36068--36604	162	3.3	160	71	12	461	24	24	28	22	2.00
36065--36755	321	2.2	321	82	4	820	24	25	28	21	1.99
36882--36934	26	2.0	26	92	0	88	26	18	28	26	1.98
38476--38528	26	2.0	26	96	0	97	26	18	26	28	1.98
38794--38847	26	2.1	26	89	0	81	24	20	27	27	1.99
38957--39009	26	2.0	26	88	0	79	26	18	26	28	1.98
39960--40105	45	3.2	45	85	0	193	18	31	32	17	1.95
41902--42072	45	3.8	45	78	6	157	19	30	29	20	1.97
41902--42066	90	1.8	90	81	2	206	18	30	30	20	1.97
42512--42564	26	2.0	26	89	7	81	28	18	24	28	1.98
42537--42825	159	1.8	159	81	1	364	24	29	26	19	1.98
42868--42920	26	2.0	26	88	0	79	26	18	26	28	1.98
43833--44014	45	4.1	44	75	4	150	17	34	28	19	1.94
50685--50736	26	2.0	26	84	0	68	28	21	25	25	1.99
50906--51108	90	2.3	90	84	3	239	18	30	31	20	1.96
50940--51118	45	4.0	44	78	5	189	16	30	32	19	1.94
51563--51640	26	3.0	26	92	1	122	28	19	23	29	1.98
52970--53137	90	1.9	90	82	0	210	17	30	30	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53585--53637	26	2.0	26	96	0	97	26	18	26	28	1.98
54092--54122	12	2.6	12	94	0	53	0	22	35	41	1.54
60791--61009	45	4.9	44	78	4	206	16	32	31	19	1.94
61584--61636	26	2.0	26	85	7	72	26	20	26	26	1.99
62891--62943	26	2.0	26	92	0	88	28	16	26	28	1.97
63089--63138	26	1.9	26	91	0	82	30	16	26	28	1.96
65008--65109	45	2.3	45	79	3	116	17	30	32	19	1.95
65540--65589	26	1.9	26	95	0	91	30	18	24	28	1.97
65883--65935	26	2.0	26	88	0	79	26	22	28	22	1.99
66593--66766	90	1.9	90	83	6	228	20	33	27	18	1.96
66651--66766	45	2.6	46	76	13	123	21	36	24	18	1.95
71598--71762	90	1.8	90	82	2	215	20	32	28	19	1.97
71547--71763	45	4.8	45	79	2	193	19	31	28	20	1.97
74625--74825	45	4.5	45	77	2	197	20	31	28	18	1.97
74605--74820	90	2.4	90	81	3	220	20	31	28	19	1.97
75251--75303	26	2.0	26	92	0	88	30	20	20	28	1.98
75606--75658	26	2.0	26	92	0	88	30	16	22	30	1.96
75435--75788	196	1.8	196	80	8	434	25	28	23	22	1.99
76764--76806	10	4.0	10	77	16	50	25	18	34	20	1.96
76772--76819	13	3.9	13	81	15	66	22	16	37	22	1.94
76764--76819	23	2.4	23	96	0	103	25	17	35	21	1.95
76862--76969	45	2.4	45	84	3	128	19	29	31	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77735--78039	169	1.8	168	84	4	425	22	29	24	23	1.99
78547--78580	16	2.2	16	89	5	52	20	44	20	14	1.87
79249--79646	170	2.3	170	81	4	446	24	29	26	20	1.99
80389--80582	90	2.2	90	83	1	237	19	33	28	19	1.96
80386--80593	45	4.6	44	77	4	191	19	32	28	19	1.96
81960--82076	45	2.6	45	76	2	119	18	34	26	20	1.96
82041--82152	46	2.5	46	73	4	102	17	32	31	18	1.95
82003--82152	45	3.3	44	72	4	129	18	32	30	19	1.95
82612--82689	26	3.0	25	86	3	111	26	14	25	33	1.94
82662--82948	158	1.8	158	81	4	364	24	28	26	20	1.99
82991--83043	26	2.0	26	85	7	72	26	16	28	28	1.97
82834--83197	196	1.9	196	81	4	457	22	28	26	21	1.99
84628--84681	26	2.1	26	92	0	90	29	20	24	25	1.99
85907--86026	45	2.7	45	80	0	132	15	28	35	20	1.94
86473--86524	25	2.0	26	88	3	79	26	19	25	28	1.98
88017--88069	26	2.0	26	96	0	97	26	15	26	32	1.95
88371--88424	26	2.1	26	89	0	81	25	22	27	24	2.00
89420--89471	26	2.0	26	92	0	86	26	19	26	26	1.99
90553--90602	26	1.9	26	95	0	91	26	20	28	26	1.99
91480--91504	13	1.9	13	100	0	50	24	16	36	24	1.94
91550--91658	45	2.4	44	80	10	114	22	33	27	16	1.96
92429--92481	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93452--93557	45	2.4	44	80	4	113	16	34	32	16	1.91
99917--99969	26	2.0	26	88	0	79	28	20	24	26	1.99
100273--100325	26	2.0	26	88	0	79	26	20	28	24	1.99
101604--101855	136	1.9	136	84	5	339	25	27	28	19	1.99
102069--102121	26	2.0	26	89	7	81	22	24	28	24	2.00
102985--103009	13	1.9	13	100	0	50	24	16	36	24	1.94
103052--103202	45	3.4	44	76	3	151	17	30	29	22	1.96
103277--103327	26	2.0	26	88	7	77	27	17	27	27	1.98
103767--103819	26	2.0	26	85	7	72	33	15	20	30	1.93
104877--104901	13	1.9	13	100	0	50	16	16	44	24	1.86

Tables:   1   2