genome.fa.s668.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168493.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_90, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100673

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1519--1557	21	1.9	20	84	5	51	33	25	35	5	1.78
2176--2228	26	2.0	26	92	0	88	26	20	24	28	1.99
4149--4190	22	1.9	22	85	0	57	30	23	38	7	1.82
3211--9172	865	6.8	864	84	7	7181	25	24	24	25	2.00
8249--8318	26	2.8	26	93	4	117	28	18	24	28	1.98
8249--8325	25	3.0	26	88	5	113	28	19	23	28	1.98
9146--9198	26	2.0	26	96	0	97	26	22	24	26	2.00
15713--15765	26	2.0	26	96	0	97	26	22	24	26	2.00
17500--17876	157	2.4	158	86	1	517	23	31	27	18	1.97
21235--21287	26	2.0	26	92	0	88	28	22	24	24	2.00
25726--25783	26	2.2	27	90	3	91	27	20	24	27	1.99
26623--26675	26	2.0	26	92	0	88	26	24	24	24	2.00
28384--28434	26	2.0	26	92	0	84	29	19	19	31	1.97
30164--30216	26	2.0	26	92	0	88	28	22	22	26	1.99
25029--31365	894	7.1	895	86	4	8561	25	24	24	25	2.00
38837--38869	12	2.8	12	100	0	66	39	18	27	15	1.90
39045--39097	26	2.0	26	92	0	88	28	22	22	26	1.99
39939--39989	26	2.0	26	92	0	84	27	19	23	29	1.98
37429--50627	870	14.9	893	82	6	15076	25	24	24	25	2.00
40835--40887	26	2.0	26	96	0	97	30	22	20	26	1.98
45459--45528	22	3.2	22	100	0	140	31	28	35	4	1.77
47854--47906	26	2.0	26	88	0	79	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56958--57010	26	2.0	26	96	0	97	26	22	24	26	2.00
56984--57351	159	2.3	159	86	1	497	23	29	26	19	1.98
57123--60668	881	4.1	864	82	6	4140	26	24	23	25	2.00
59743--59796	26	2.1	26	85	0	72	27	20	22	29	1.98
60668--61034	158	2.3	158	80	3	409	23	28	26	20	1.99
62573--62625	26	2.0	26	85	7	72	28	18	22	30	1.98
63471--63522	25	2.0	26	92	3	88	26	19	25	28	1.98
60826--68989	897	9.1	886	75	12	6460	25	24	24	25	2.00
64360--64412	26	2.0	26	89	7	81	26	18	24	30	1.98
64386--64752	159	2.3	158	84	1	457	22	30	27	19	1.98
66267--66318	25	2.0	26	88	3	79	28	19	23	28	1.98
67968--68020	26	2.0	26	96	0	97	26	22	24	26	2.00
64545--68991	872	5.1	875	89	6	6611	25	25	24	24	2.00
68855--68907	26	2.0	26	96	0	97	26	22	24	26	2.00
76624--78185	804	1.9	803	90	1	2459	26	23	23	26	2.00
78965--79017	26	2.0	26	88	0	79	28	20	24	26	1.99
81614--81664	25	2.1	24	92	3	84	27	23	19	29	1.98
83356--83425	26	2.7	26	97	0	131	30	20	24	25	1.99
77425--87907	897	11.8	897	84	5	13193	26	24	23	25	2.00
85165--85217	26	2.0	26	96	0	97	26	22	24	26	2.00
86061--86113	26	2.0	26	92	0	88	26	20	22	30	1.98
77425--87907	896	11.8	896	84	5	13263	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87855--87933	26	3.0	26	86	0	113	30	18	21	29	1.97
94403--94455	26	2.0	26	92	0	88	28	22	24	24	2.00
96503--96554	26	2.0	26	92	0	86	26	15	26	30	1.96
95747--100673	897	5.5	893	84	3	6121	25	23	23	26	2.00
98295--98347	26	2.0	26	92	0	88	26	20	24	28	1.99
99189--99239	26	2.0	26	96	0	93	31	17	21	29	1.96

Tables:   1

The End!