genome.fa.s67.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167892.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_159, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62920

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--3797	180	21.5	180	75	9	2532	41	9	8	40	1.69
6--3797	713	5.4	707	76	10	2887	41	9	8	40	1.69
6--3797	359	10.7	353	76	8	2777	41	9	8	40	1.69
3948--7615	180	20.2	181	72	10	1907	41	10	8	39	1.68
4974--7618	717	3.7	707	76	9	2000	41	9	8	40	1.68
5138--7078	898	2.2	886	80	5	2103	42	9	8	39	1.68
6864--6896	18	1.9	17	88	11	50	39	6	6	48	1.53
5128--7258	533	4.0	524	75	9	1591	42	9	8	39	1.68
9476--10269	177	4.4	175	78	5	601	39	8	10	41	1.71
10801--11549	180	4.2	177	78	7	660	39	8	10	41	1.70
10801--11567	357	2.1	358	79	5	836	39	8	10	41	1.70
12131--15405	180	18.3	180	76	7	2337	40	8	9	41	1.68
12790--14890	359	5.8	359	76	9	865	40	8	9	41	1.69
15420--16612	181	6.7	179	79	6	1065	40	8	10	41	1.69
15420--16612	358	3.4	357	79	7	995	40	8	10	41	1.69
14559--16154	855	1.9	858	79	7	1839	41	8	8	41	1.66
15420--16564	539	2.1	530	82	5	1322	40	8	10	41	1.69
16609--19594	181	16.7	179	75	7	1965	40	8	9	42	1.67
16609--19344	361	7.6	357	77	6	1938	40	8	9	42	1.67
19565--19621	27	2.1	27	90	0	87	45	8	8	36	1.66
19844--24705	181	27.2	180	75	8	3365	41	9	8	40	1.69
21149--24705	359	9.9	354	75	8	2333	41	9	9	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21211--24701	180	19.4	177	75	9	1948	40	10	9	39	1.70
21149--24735	540	6.6	534	76	8	2742	41	9	9	40	1.70
24781--25395	185	3.5	179	76	11	543	42	7	6	43	1.60
25499--29318	181	21.4	180	75	9	2512	41	8	9	40	1.68
25501--32980	180	41.9	179	74	10	4492	40	8	9	41	1.68
27046--27360	166	1.9	166	81	6	388	41	7	9	41	1.64
25501--32548	891	7.9	870	74	11	4179	40	8	9	41	1.68
25501--32710	713	10.1	714	74	10	4631	40	8	9	41	1.68
32207--32237	16	1.9	16	93	0	53	22	9	0	67	1.19
33137--33597	177	2.6	177	77	7	400	40	8	9	40	1.69
37347--37409	21	3.0	21	71	19	58	58	11	3	26	1.47
41056--46573	181	30.4	181	70	12	2104	41	10	8	40	1.69
41060--57951	360	46.8	356	69	14	4439	41	9	8	40	1.68
44078--44113	16	2.2	17	90	5	56	41	11	0	47	1.39
44066--44113	17	2.8	17	81	12	62	43	10	0	45	1.38
44064--44335	140	1.9	140	81	1	321	38	8	7	45	1.64
44204--57954	361	38.2	358	71	12	6228	41	9	8	40	1.68
46729--50308	181	20.0	181	76	8	2763	41	10	8	39	1.69
50733--57950	181	40.4	181	74	10	4280	41	9	8	40	1.68
50394--57949	363	21.2	359	71	12	2093	41	9	8	40	1.68
46584--58023	892	12.8	886	73	10	6698	41	9	8	40	1.68
56092--56406	166	1.9	166	81	5	386	41	8	7	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56682--57182	174	2.8	174	77	9	410	43	9	7	39	1.65
57347--57671	179	1.8	178	80	9	392	42	8	8	41	1.65
58842--62834	532	7.5	532	73	12	1813	39	9	9	41	1.69
59385--60602	179	6.9	178	75	10	509	40	9	9	40	1.70
58753--62834	180	22.9	177	73	11	1907	40	9	9	41	1.69
61537--61820	156	1.8	157	84	6	389	40	8	7	43	1.64
61693--62826	362	3.2	359	76	9	825	40	8	8	42	1.66
61694--62822	181	6.3	176	75	8	691	40	8	9	42	1.66

Tables:   1

The End!