genome.fa.s671.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168496.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_93, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94084

Tables:   1   2   

This is table  2  of  2  ( 185 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36158--36258	22	4.5	22	71	15	64	45	2	1	49	1.28
36224--36287	22	3.0	22	74	17	64	51	0	0	48	1.00
36345--36440	16	6.7	15	69	24	64	51	1	2	45	1.20
36331--36411	26	2.8	29	76	21	80	53	0	1	45	1.08
36629--36675	16	3.1	17	82	17	59	48	4	0	46	1.21
38275--38312	14	2.7	15	80	16	53	55	0	0	44	0.99
38359--38409	27	1.9	26	88	4	75	47	3	1	47	1.32
38552--38600	24	2.0	26	84	8	66	59	2	2	36	1.21
38577--38644	19	3.6	18	73	23	52	51	0	2	45	1.16
38581--38612	13	2.5	13	94	0	55	53	0	0	46	1.00
38622--38676	25	2.2	25	81	18	62	34	5	9	50	1.57
38711--38760	24	2.1	24	85	14	68	52	0	4	44	1.20
38831--38878	14	3.4	14	80	11	53	52	0	4	43	1.20
39089--39130	19	2.3	18	91	4	66	45	0	2	52	1.13
39087--39134	16	2.9	16	77	19	53	45	0	2	52	1.12
39211--39240	14	2.2	14	94	5	53	46	3	0	50	1.18
39242--39325	26	3.2	26	81	13	75	45	2	3	48	1.32
39301--39393	46	2.0	46	95	0	168	40	6	2	50	1.40
39623--39673	22	2.1	26	86	13	74	47	0	0	52	1.00
39621--39676	23	2.3	23	79	20	60	46	0	0	53	1.00
39831--39874	12	3.7	12	81	0	52	50	0	0	50	1.00
40026--40061	15	2.5	14	90	4	54	44	2	0	52	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41529--41911	177	2.1	177	80	6	407	40	10	7	41	1.67
42181--42234	20	2.9	19	76	15	60	46	3	0	50	1.19
42196--42248	23	2.3	23	79	20	58	47	3	0	49	1.19
42361--42422	28	2.2	29	80	13	76	50	3	0	46	1.17
42494--42531	7	5.7	7	87	6	53	44	0	7	47	1.32
42497--42541	14	3.5	13	85	11	58	40	0	6	53	1.27
42601--42635	18	1.9	18	94	0	61	54	0	0	45	0.99
42603--42668	25	2.6	25	79	15	73	54	1	0	43	1.09
42605--42662	13	4.5	13	75	14	50	55	1	0	43	1.10
42752--42787	18	1.9	19	88	5	56	55	2	2	38	1.29
42684--42834	18	8.1	18	65	22	53	49	2	3	44	1.35
43913--43960	23	2.0	24	92	4	80	52	2	0	45	1.12
44417--44446	14	2.1	14	93	0	51	46	0	0	53	1.00
44558--44605	18	2.4	20	80	16	55	41	2	0	56	1.11
45116--45162	10	5.0	10	77	12	55	42	0	0	57	0.98
45163--45211	22	2.2	23	82	7	66	57	2	4	36	1.30
45481--46509	176	5.7	180	74	8	661	40	8	9	41	1.69
45452--46460	182	5.7	178	73	10	666	39	9	9	41	1.68
46591--46685	35	2.8	33	73	19	81	42	2	2	53	1.24
46674--46703	8	3.8	8	100	0	60	46	0	0	53	1.00
46671--46727	20	3.0	20	78	17	59	43	0	0	56	0.99
47846--47983	67	2.1	67	83	0	168	36	8	8	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47913--48482	180	3.2	181	76	7	482	41	7	8	42	1.63
48155--48774	324	1.9	325	80	7	733	42	8	8	40	1.64
49224--49461	120	2.0	120	82	4	293	35	10	7	45	1.68
49344--50308	180	5.3	178	76	7	721	42	8	6	42	1.61
49344--50313	361	2.7	360	79	6	973	42	8	6	42	1.61
50324--50364	20	2.0	20	86	9	57	41	7	0	51	1.30
50549--50934	132	3.0	128	92	5	647	54	17	18	8	1.68
81781--81830	26	1.9	26	87	0	73	40	28	10	22	1.86
80303--82668	524	4.5	525	87	3	3224	39	17	13	29	1.88
82268--83068	404	2.0	404	86	2	1117	38	18	12	30	1.88
82884--83640	390	1.9	390	89	2	1180	38	18	12	30	1.88
83263--84655	527	2.6	526	89	2	2079	38	18	13	29	1.89
83733--85589	932	2.0	931	86	3	2610	38	18	13	29	1.89
84660--85863	527	2.3	528	83	4	1462	38	18	13	29	1.88
85058--86714	862	1.9	864	85	2	2301	38	18	13	29	1.88
85862--87390	527	2.9	526	86	2	2210	38	18	13	30	1.88
86926--87861	478	2.0	477	85	3	1274	38	16	13	31	1.87
88474--88928	225	2.0	224	87	2	655	43	19	11	25	1.85
90632--91348	365	2.0	366	88	2	1066	39	20	12	26	1.89
92764--93741	485	2.0	485	89	2	1493	29	13	18	38	1.89
92764--94010	485	2.6	469	83	8	1345	29	13	17	38	1.88

Tables:   1   2

The End!