genome.fa.s677.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168502.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_99, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89750

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2544--2936	58	6.7	59	80	11	407	35	12	8	44	1.72
2540--2936	180	2.2	174	88	7	570	35	12	8	43	1.73
2917--2951	16	2.2	16	90	5	54	34	22	2	40	1.69
5053--5105	26	2.0	26	96	0	97	26	24	20	28	1.99
3364--6689	889	3.8	871	82	7	3599	26	23	23	26	2.00
7552--7604	26	2.0	26	96	0	97	28	26	18	26	1.98
9325--9377	26	2.0	26	92	0	88	28	20	20	30	1.98
11813--11863	26	2.0	26	96	0	93	25	25	19	29	1.99
10494--12736	898	2.5	886	86	2	3070	25	25	24	25	2.00
14020--14072	26	2.0	26	85	7	72	32	24	15	28	1.95
22371--24397	891	2.3	894	83	4	2548	25	23	24	26	2.00
24874--25334	59	7.7	58	85	7	579	33	12	8	45	1.72
24874--25334	119	3.9	117	86	7	583	33	12	8	45	1.72
25350--25438	5	18.6	5	74	15	73	78	2	3	15	0.98
25380--25429	7	7.3	7	77	8	50	82	2	2	14	0.86
25380--25429	14	3.6	14	76	15	59	82	2	2	14	0.86
25355--25438	27	2.9	28	78	10	89	78	2	3	15	0.99
25350--25445	32	2.9	34	77	13	103	77	2	5	15	1.05
25350--25438	9	9.3	10	72	18	73	78	2	3	15	0.98
25469--25500	15	2.1	15	94	0	55	78	3	0	18	0.89
26326--26415	7	11.6	7	73	15	54	74	3	5	16	1.14
26354--26467	20	5.4	19	67	18	57	72	4	4	18	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26365--26476	43	2.7	40	71	23	90	70	4	2	22	1.18
26593--26638	22	2.0	23	87	4	67	80	4	0	15	0.86
26849--27105	42	6.1	41	91	3	381	34	23	17	24	1.96
27733--27786	10	5.6	10	76	6	58	11	12	0	75	1.04
27734--27786	19	2.8	20	85	5	65	11	13	0	75	1.05
38887--38936	15	3.2	15	82	5	55	80	4	4	12	1.00
38964--39024	15	3.8	15	72	16	50	68	1	0	29	0.99
38964--39034	26	2.8	26	77	12	76	67	2	0	29	1.05
40735--40787	26	2.0	26	96	0	97	28	24	20	26	1.99
42496--42520	11	2.3	11	100	0	50	28	20	24	28	1.99
43376--43428	26	2.0	26	92	0	88	26	26	20	26	1.99
39227--46837	900	8.6	876	85	5	9955	26	24	23	25	2.00
45160--45212	26	2.0	26	88	0	79	30	24	16	28	1.97
46061--46113	26	2.0	26	100	0	106	26	26	20	26	1.99
46087--47542	704	2.1	704	90	3	2324	27	24	22	26	2.00
47653--47705	26	2.0	26	96	0	97	26	24	20	28	1.99
48532--48584	26	2.0	26	89	7	81	28	24	20	26	1.99
46791--49441	877	3.0	879	87	4	3964	25	24	24	25	2.00
49251--49600	159	2.2	159	85	2	461	20	28	29	21	1.98
51209--54449	863	3.7	859	84	6	4056	26	24	23	25	2.00
52800--52852	26	2.0	26	100	0	106	26	26	20	26	1.99
55196--55718	60	8.8	60	84	5	634	33	13	8	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55196--55717	119	4.4	119	86	5	707	33	13	8	44	1.73
55733--55837	5	21.6	5	74	16	80	80	1	3	14	0.95
55728--55833	9	11.6	9	69	16	67	79	1	4	14	0.98
55733--55837	13	9.2	11	73	17	81	80	1	3	14	0.95
55733--55833	38	2.8	36	82	11	116	80	1	3	13	0.95
55728--55837	56	2.0	54	82	12	134	79	1	4	14	0.98
55733--55837	18	5.7	18	78	17	101	80	1	3	14	0.95
56592--56649	31	1.9	31	83	13	77	74	5	8	12	1.21
56690--56785	4	24.0	4	70	17	58	67	4	0	28	1.09
57028--57066	17	2.3	17	83	12	53	2	0	10	87	0.65
57074--57243	41	4.1	42	91	4	249	35	22	18	22	1.96
57216--57270	27	2.0	27	96	0	101	32	23	16	27	1.96
57175--57379	68	3.0	68	95	1	367	34	23	17	24	1.96
57284--57338	27	2.0	27	92	0	92	34	21	14	29	1.93
57311--57420	41	2.7	41	94	1	184	33	21	18	26	1.96
58396--58476	24	3.4	24	82	14	80	11	13	0	75	1.05
58411--58489	8	9.8	8	81	12	90	11	11	0	77	1.00
68078--68357	59	4.7	58	85	11	372	34	12	7	44	1.72
68374--68481	5	22.6	5	76	17	97	79	1	3	14	0.95
68370--68477	28	3.8	28	77	13	114	79	1	4	13	0.97
68374--68481	18	5.7	18	78	16	103	79	1	3	14	0.95
69364--69417	28	1.9	28	85	14	76	72	5	7	14	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69399--69479	43	2.0	40	83	11	101	71	4	3	19	1.20
70290--70336	25	1.9	24	91	4	76	27	23	19	29	1.98
69715--72551	901	3.1	878	80	11	2923	25	23	24	25	2.00
72096--72148	26	2.0	26	88	0	79	26	20	20	32	1.98
72716--72768	26	2.0	26	89	7	81	28	20	20	30	1.98
73580--73632	26	2.0	26	92	0	88	28	24	20	26	1.99
72918--78417	875	6.3	873	84	4	6598	25	24	23	26	2.00
76203--76255	26	2.0	26	85	0	70	30	28	16	24	1.97
78737--81969	872	3.7	872	85	4	4155	26	24	23	25	2.00
81349--81404	26	2.2	26	93	0	94	28	25	19	26	1.99
83883--83935	26	2.0	26	92	0	88	28	24	18	28	1.98
83018--89750	885	7.7	887	82	7	7776	26	23	23	25	2.00
89087--89139	26	2.0	26	96	0	97	28	26	18	26	1.98

Tables:   1

The End!