genome.fa.s8.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167833.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_105, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85413

Tables:   1   2   3   

This is table  2  of  3  ( 241 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37358--37762	181	2.2	181	79	3	438	40	7	8	43	1.64
38607--38658	21	2.5	22	75	12	56	50	0	1	48	1.12
38617--38687	32	2.2	33	82	9	85	47	0	2	49	1.16
38700--38766	27	2.5	27	81	13	68	46	2	2	47	1.33
38819--38926	17	6.1	17	68	16	58	49	1	1	47	1.23
39190--39221	15	2.1	16	94	5	57	50	0	0	50	1.00
40138--40184	18	2.5	19	80	13	53	51	2	2	44	1.25
41023--41159	6	23.2	6	68	20	58	51	3	0	44	1.19
41288--41353	14	4.7	15	73	19	54	50	1	1	46	1.20
42130--42190	20	3.2	19	77	11	63	40	0	1	57	1.08
42163--42197	13	2.6	13	90	4	52	40	0	0	60	0.97
42370--42394	13	1.9	13	100	0	50	52	0	8	40	1.31
42519--42567	11	4.5	11	76	19	57	40	0	0	59	0.98
42504--42554	20	2.5	22	81	12	63	43	0	0	56	0.99
42519--42581	11	5.2	13	72	25	50	41	0	0	58	0.98
42709--42757	19	2.5	20	77	6	57	51	0	0	48	1.00
43328--43925	181	3.3	179	82	6	629	42	8	9	39	1.69
43328--43947	180	3.4	181	82	5	634	41	8	9	39	1.69
43509--44399	453	2.0	452	82	4	1107	41	9	10	38	1.71
43962--44641	180	3.8	180	80	8	672	40	9	9	40	1.70
43962--44582	179	3.5	180	81	7	613	41	9	9	39	1.70
45887--45921	13	2.8	12	87	8	52	42	0	8	48	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46639--46682	19	2.2	20	84	11	56	36	2	4	56	1.32
46614--46693	26	3.3	23	68	22	56	45	1	3	50	1.28
46985--47019	18	1.9	18	88	0	52	51	2	2	42	1.31
47128--47203	8	9.2	9	70	24	53	52	0	1	46	1.08
47151--47200	17	3.0	18	80	16	63	52	0	0	48	1.00
47131--47203	25	2.9	26	80	9	82	53	0	1	45	1.09
47232--47290	21	2.7	21	84	5	73	45	5	3	45	1.42
47273--47318	17	2.8	16	78	15	58	52	0	4	43	1.21
47385--47434	20	2.6	18	79	17	55	50	6	2	42	1.38
47629--47676	25	1.9	25	86	0	69	47	2	2	47	1.25
48092--48166	32	2.3	33	84	8	93	50	0	1	48	1.09
48263--48318	23	2.4	25	77	20	66	57	0	0	42	0.99
48940--48993	25	2.0	26	86	10	74	55	1	1	40	1.21
48947--49006	26	2.3	26	88	5	86	50	0	1	48	1.11
48976--49024	17	2.8	17	78	12	55	46	0	0	53	1.00
49338--49391	18	2.9	19	76	10	58	48	0	5	46	1.25
49655--49767	15	7.4	15	70	14	70	45	0	0	54	0.99
49717--49767	19	2.6	20	81	9	61	49	0	0	50	1.00
50651--50689	19	2.0	20	85	5	53	53	0	0	46	1.00
51370--51417	19	2.5	20	83	16	66	54	2	0	43	1.12
51412--51455	19	2.3	19	80	7	54	54	4	0	40	1.21
51543--51577	14	2.5	14	95	0	61	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52281--52330	24	2.0	25	84	3	66	48	0	2	50	1.12
52964--53048	6	13.7	6	71	23	61	50	0	1	48	1.08
52950--53076	62	2.0	64	82	14	158	48	0	2	48	1.14
53157--53199	15	2.8	16	86	6	54	44	0	0	55	0.99
53150--53216	13	4.8	13	75	17	55	47	1	0	50	1.10
53179--53237	26	2.3	26	82	11	68	50	0	0	49	1.00
53664--53697	16	2.1	16	94	0	59	47	0	0	52	1.00
53844--55211	180	7.6	177	74	8	907	42	10	7	39	1.68
55244--56787	181	8.6	181	75	7	1208	40	10	8	40	1.70
56639--56897	138	1.8	141	80	5	310	41	8	9	40	1.67
56877--57933	355	3.0	353	78	5	989	41	11	7	39	1.69
56856--57887	175	5.8	178	73	7	650	41	11	7	40	1.69
57889--57976	43	2.0	43	95	0	158	51	10	10	28	1.68
58154--58202	17	2.7	19	75	18	59	40	12	6	40	1.67
57935--58570	180	3.6	175	78	6	548	41	10	7	41	1.67
58985--59026	17	2.4	18	84	8	59	61	2	0	35	1.09
59323--59369	14	3.1	15	77	22	53	48	2	0	48	1.13
59952--59983	16	2.0	16	100	0	64	31	0	6	62	1.20
60394--60443	10	4.9	10	80	9	57	56	0	2	42	1.11
60565--60618	22	2.4	22	84	9	65	46	0	0	53	1.00
60565--60627	23	2.8	23	83	11	69	47	0	0	52	1.00
60591--60626	19	2.0	17	89	10	54	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60715--60778	18	3.4	18	77	12	58	50	4	0	45	1.22
62767--62814	6	7.5	6	77	13	51	60	4	4	31	1.35
63507--63921	183	2.3	179	79	7	423	43	8	7	40	1.65
64171--64229	25	2.3	26	82	11	77	54	0	3	42	1.17
64192--64239	22	2.2	22	92	0	78	54	0	2	43	1.12
64566--65210	181	3.6	181	79	5	579	41	8	9	40	1.68
64886--65208	168	1.9	167	82	6	402	40	8	8	42	1.65
65688--66309	177	3.4	176	76	13	529	39	7	9	43	1.65
66777--66850	13	6.1	13	71	15	59	47	2	0	50	1.15
66763--66826	19	3.4	19	76	20	62	46	1	0	51	1.10
66770--66815	22	2.1	21	84	4	56	50	0	0	50	1.00
67046--67096	23	2.2	23	86	6	68	41	1	7	49	1.43
67732--67824	23	4.3	23	74	16	74	47	1	1	50	1.15
67762--67824	20	3.0	21	80	13	67	46	1	1	50	1.20
67732--67821	32	2.8	31	76	17	85	47	1	1	50	1.15
68844--69354	180	2.8	182	80	5	511	44	7	7	40	1.62
69871--69911	17	2.3	18	87	8	57	56	0	4	39	1.21
70085--70145	26	2.3	26	91	5	97	44	0	3	52	1.17
70248--70291	19	2.2	20	88	4	63	52	4	2	40	1.34
70349--70389	21	2.0	21	85	0	55	56	0	2	41	1.13
70513--70569	18	3.2	18	76	18	66	52	3	3	40	1.35
70513--70577	35	1.9	34	85	14	91	52	3	4	40	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71318--71366	18	2.8	17	84	12	64	46	6	8	38	1.58
70791--71817	176	5.8	178	77	9	798	39	7	10	42	1.67
70842--71705	357	2.4	350	79	7	889	40	7	10	42	1.66
72744--72777	13	2.5	13	90	4	50	50	0	2	47	1.16
72796--73189	181	2.2	179	79	9	437	38	6	11	43	1.67
73756--73801	18	2.6	18	82	0	56	45	2	2	50	1.26
74099--74154	21	2.8	21	71	15	55	55	3	0	41	1.17
74190--74267	36	2.2	35	80	8	86	44	5	1	48	1.32
74195--74270	30	2.6	28	76	17	75	46	5	1	47	1.33
75531--75576	23	2.0	22	87	4	65	36	0	2	60	1.09
75516--75568	26	2.0	28	81	7	65	39	0	1	58	1.09
76136--76210	30	2.7	28	79	16	77	50	0	1	48	1.09
76827--76864	17	2.2	17	86	9	51	42	0	2	55	1.14
77994--78033	19	2.0	20	90	4	64	52	2	5	40	1.37
78081--78145	19	3.4	19	76	12	62	47	1	1	49	1.20
78081--78142	18	3.4	18	82	4	63	48	1	1	48	1.21
78265--78326	27	2.2	28	86	8	83	46	3	4	45	1.40
78408--78456	25	2.0	25	84	8	64	44	2	4	48	1.33
78680--78726	23	2.0	24	88	12	71	46	2	0	51	1.13
79127--79161	17	2.1	17	89	10	54	54	0	2	42	1.15
79522--79558	18	2.0	19	89	5	58	45	5	10	37	1.62
79461--80128	181	3.7	178	79	3	633	42	7	9	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81539--81576	11	3.7	11	83	16	55	55	0	0	44	0.99
81730--82181	177	2.5	177	78	6	414	37	11	8	42	1.72
82088--82120	18	1.9	17	88	11	50	39	6	6	48	1.53
82891--82931	21	1.9	22	85	5	57	58	2	0	39	1.11
83310--83336	11	2.5	11	100	0	54	37	0	0	62	0.95
84255--84330	22	3.5	21	69	20	59	47	5	2	44	1.39
84269--84339	19	3.4	20	75	11	63	47	4	2	45	1.36
84500--84587	6	14.0	6	72	14	54	52	1	0	46	1.08
84500--84645	20	7.5	19	67	19	77	50	2	0	47	1.15
84500--84568	22	2.8	24	82	12	79	50	1	0	47	1.09

Tables:   1   2   3