genome.fa.s80.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167905.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_170, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59665

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51--2950	179	16.3	177	77	9	2061	41	9	8	40	1.68
51--5866	176	32.2	177	71	12	2419	41	10	8	40	1.69
1--14674	537	27.0	536	70	13	4605	41	9	8	40	1.68
51--14668	361	40.4	357	69	14	4514	41	9	8	40	1.68
51--14648	902	16.1	882	68	14	2410	41	9	8	40	1.68
2694--3227	283	1.9	284	80	5	623	42	10	8	38	1.70
3460--5866	181	13.4	181	76	8	1977	40	10	8	40	1.70
5864--12816	181	38.8	182	74	8	2966	41	9	8	40	1.68
5864--14216	362	23.3	358	73	10	3033	41	9	8	40	1.68
5864--14674	542	16.4	538	75	8	5290	41	9	8	40	1.68
9531--9582	18	2.9	19	81	16	67	38	5	9	46	1.61
10414--10725	172	1.8	173	80	2	385	42	9	6	41	1.65
10773--14213	181	19.2	179	71	10	1237	41	9	8	40	1.68
12908--14216	182	7.2	181	76	7	1057	41	9	8	40	1.69
10386--14216	181	21.4	181	72	10	857	41	9	8	40	1.68
14078--14373	160	1.9	160	81	2	362	45	7	8	38	1.63
14699--15370	177	3.7	179	77	7	616	41	7	9	42	1.64
14700--15358	361	1.8	360	82	6	839	41	6	9	42	1.64
15301--15437	67	2.1	67	83	1	168	41	8	11	38	1.71
15408--15572	84	2.0	85	82	3	208	44	7	12	35	1.72
15595--16068	181	2.6	179	80	7	478	43	10	8	37	1.69
14840--16098	689	1.8	686	78	5	1407	41	8	9	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21598--21801	106	2.0	101	80	6	230	32	28	13	25	1.93
39655--39740	45	1.9	45	83	4	111	25	23	30	20	1.99
40898--41105	105	2.0	103	81	8	246	25	12	30	31	1.93
46650--47777	181	6.3	181	78	7	940	39	9	9	41	1.70
46650--48314	362	4.7	357	73	11	1032	40	9	8	40	1.69
46858--47766	356	2.5	356	79	5	904	41	9	8	40	1.69
47872--48285	175	2.3	179	82	7	479	42	9	7	40	1.66
48244--48380	67	2.1	67	84	1	177	38	12	8	40	1.72
49465--55732	181	35.1	178	75	9	3578	40	8	9	41	1.69
50621--50936	167	1.9	167	84	2	420	39	8	10	41	1.70
50918--51236	164	2.0	164	84	3	419	39	9	8	42	1.68
51069--55732	361	13.0	354	75	8	3056	40	8	9	41	1.68
51069--55732	542	8.7	539	77	7	3612	40	8	9	41	1.68
52739--53227	173	2.9	169	78	5	419	40	7	10	42	1.67
53785--53837	24	2.2	25	74	12	58	45	3	0	50	1.19
55597--55872	140	2.0	140	83	2	349	41	7	8	42	1.63
55733--57750	181	11.3	181	76	5	1693	39	8	10	42	1.69
55733--57750	359	5.6	358	77	7	1533	39	8	10	42	1.69
57784--58112	174	1.9	176	80	9	395	41	9	9	39	1.70
58286--59618	179	7.5	179	74	9	890	40	8	9	40	1.69
58647--59607	357	2.7	354	79	8	971	41	8	9	40	1.68

Tables:   1

The End!