genome.fa.s82.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167907.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_172, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59215

Tables:   1   2   

This is table  2  of  2  ( 205 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30943--31020	25	3.0	25	73	16	68	50	0	0	50	1.00
30953--31008	12	4.5	12	82	11	51	48	0	0	51	1.00
30959--31031	33	2.1	34	83	14	89	45	1	0	53	1.09
31746--31798	23	2.3	23	83	9	63	49	3	3	43	1.38
31797--31833	20	2.0	19	85	15	51	43	5	0	51	1.24
32231--32270	13	3.1	14	82	13	50	42	0	0	57	0.98
32377--32443	18	3.8	18	80	9	68	55	0	2	41	1.15
32516--32591	25	3.0	24	72	14	64	48	1	1	48	1.18
33066--33142	26	2.9	27	80	16	72	48	5	1	45	1.33
33332--33378	23	2.0	23	87	0	67	53	0	0	46	1.00
33550--33610	24	2.6	24	84	7	63	54	0	0	45	1.00
33570--33611	4	10.5	4	85	10	50	54	0	0	45	0.99
33578--33617	18	2.2	18	90	4	62	55	0	0	45	0.99
33563--33610	23	2.0	24	92	8	80	56	0	0	43	0.99
33622--33692	26	2.9	25	78	12	69	42	1	4	52	1.29
33725--33759	18	1.9	18	88	0	52	48	2	0	48	1.16
33755--33851	28	3.5	27	68	19	65	45	1	2	51	1.19
33837--33884	21	2.2	22	85	14	64	41	0	2	56	1.11
34367--34430	25	2.5	26	82	5	78	53	0	0	46	1.00
34388--34437	25	2.0	25	84	0	64	50	2	0	48	1.12
34888--34937	25	2.0	24	81	11	57	50	0	4	46	1.20
35081--35118	19	2.0	20	89	5	60	47	2	5	44	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35803--35865	28	2.2	28	80	5	74	57	0	0	42	0.99
35790--35855	32	2.0	33	82	11	82	56	0	1	42	1.08
35822--35868	17	2.7	18	81	15	55	61	0	0	38	0.96
36920--36957	15	2.4	16	91	4	60	44	5	5	44	1.49
37049--37109	21	3.1	20	84	13	74	54	0	0	45	1.00
38049--38149	17	6.2	17	69	22	67	46	0	1	50	1.19
38043--38115	23	3.2	23	75	16	80	46	0	4	49	1.21
38149--38220	32	2.2	32	80	9	85	45	2	1	50	1.25
38173--38219	16	3.0	16	79	14	62	42	4	0	53	1.20
38726--38768	20	2.0	22	91	8	72	44	0	0	55	0.99
38729--38797	23	3.1	23	80	13	65	47	0	1	50	1.09
39445--39493	22	2.2	22	82	7	55	51	2	2	44	1.24
39823--39859	9	3.9	10	86	10	51	56	0	0	43	0.99
39958--39994	17	2.3	17	86	9	51	64	0	13	21	1.27
40343--40375	18	1.9	17	88	11	50	39	6	6	48	1.53
41111--41150	21	1.9	21	84	0	53	57	2	2	37	1.26
41154--41262	14	8.5	13	68	21	52	46	0	4	47	1.29
41194--41218	11	2.3	11	100	0	50	48	0	8	44	1.32
41165--41295	37	3.7	35	75	17	117	46	3	4	45	1.39
41481--41827	194	1.8	191	83	6	468	42	9	8	38	1.69
42149--42197	18	2.8	18	72	25	50	59	4	0	36	1.17
42134--42200	26	2.6	27	72	13	68	59	5	0	34	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43094--45786	361	7.5	349	72	10	1129	40	8	9	41	1.68
44379--44411	18	1.9	17	88	11	50	48	9	6	36	1.60
43085--45787	181	15.1	181	73	9	1815	40	8	9	41	1.68
45824--46428	181	3.4	177	78	7	558	37	10	9	42	1.71
46486--47841	179	7.6	180	76	8	1070	41	10	7	39	1.69
46608--47640	178	5.8	177	75	10	501	41	11	8	39	1.70
47807--47880	36	2.1	36	94	0	130	51	8	2	37	1.46
47917--48241	170	1.9	171	84	3	431	40	10	8	40	1.70
47917--48697	180	4.4	175	75	8	541	39	9	9	41	1.69
47916--48706	356	2.2	351	79	5	844	39	9	9	41	1.69
48912--48966	18	3.1	18	75	15	60	47	0	3	49	1.19
51339--51405	19	3.0	23	77	22	79	46	7	2	43	1.47
51446--51489	22	2.0	23	90	4	72	56	0	2	40	1.11
51501--51545	14	3.1	15	84	9	58	46	2	0	51	1.13
51570--51611	22	2.0	20	82	17	50	54	2	2	40	1.26
51738--51767	14	2.1	14	93	0	51	46	0	0	53	1.00
51880--51928	18	2.5	20	77	19	57	40	4	0	55	1.19
52191--52218	14	2.0	14	100	0	56	57	0	0	42	0.99
52188--52234	17	2.8	17	81	9	53	55	0	2	42	1.12
52248--52286	19	2.1	19	85	9	53	46	2	2	48	1.29
52556--53304	184	4.1	178	77	11	656	39	8	10	41	1.68
53039--53809	425	1.8	424	80	6	943	40	8	10	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53656--54118	179	2.6	177	78	9	424	41	7	11	39	1.70
53465--54111	357	1.8	354	79	7	754	40	7	11	40	1.70
53399--54725	180	7.4	174	73	11	694	39	8	10	41	1.69
53662--54658	176	5.6	175	75	9	597	40	7	11	41	1.69
54734--55848	357	3.1	351	75	8	833	38	8	10	42	1.69
54734--56077	176	7.5	177	73	10	771	39	7	10	42	1.68
56391--56487	47	2.2	47	83	10	125	44	3	2	50	1.29
56509--56649	56	2.4	59	79	11	139	47	2	2	47	1.28
56632--56790	29	5.3	28	70	22	69	52	1	0	45	1.13
56701--56788	15	5.6	16	68	20	53	53	0	0	46	1.00
56701--56788	20	4.5	19	71	20	67	53	0	0	46	1.00
56703--56794	9	9.6	9	70	22	55	53	0	0	46	1.00
56631--56912	26	10.1	27	67	23	90	50	1	0	47	1.15
56710--56901	37	5.2	39	70	22	114	51	1	0	47	1.07
57303--57332	14	2.1	15	93	6	53	40	0	0	60	0.97
57781--57835	26	2.2	24	81	15	58	49	3	1	45	1.30
57791--57852	26	2.3	27	84	15	76	48	1	0	50	1.10
58422--58474	19	2.8	20	73	23	60	43	1	0	54	1.11
59142--59184	22	2.0	20	86	8	59	51	0	0	48	1.00

Tables:   1   2

The End!