genome.fa.s85.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167910.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58034

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7979--8067	44	2.0	44	93	2	153	16	38	13	31	1.88
8690--8742	26	2.0	26	85	0	70	24	22	20	32	1.98
9581--9633	26	2.0	26	88	0	79	30	24	18	26	1.98
8023--14722	896	7.5	895	83	5	7872	26	23	23	26	2.00
10477--10529	26	2.0	26	88	0	79	28	22	20	28	1.99
12273--12325	26	2.0	26	88	0	79	28	22	20	28	1.99
11374--14722	892	3.7	889	83	6	4018	26	23	23	26	2.00
19730--19779	21	2.4	21	96	0	91	20	38	20	22	1.94
20804--20856	26	2.0	26	92	0	88	26	22	24	26	2.00
21791--21843	26	2.0	26	96	0	97	26	24	22	26	2.00
25217--25269	26	2.0	26	88	0	79	26	20	22	30	1.98
25033--25529	247	2.0	248	84	1	647	22	27	26	23	2.00
28103--28155	26	2.0	26	88	0	79	30	22	20	26	1.98
29004--29056	26	2.0	26	92	0	88	26	20	22	30	1.98
25288--33324	896	9.1	892	82	6	9369	25	23	24	26	2.00
29900--29952	26	2.0	26	96	0	97	26	24	22	26	2.00
31670--31722	26	2.0	26	88	0	79	28	22	22	26	1.99
32564--32616	26	2.0	26	92	0	88	28	24	20	26	1.99
40196--40274	26	3.0	26	96	0	149	25	22	25	26	2.00
40420--40682	131	2.0	131	99	0	517	24	24	21	28	1.99
41231--41283	26	2.0	26	92	0	88	26	22	24	26	2.00
42114--42166	26	2.0	26	92	0	88	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43008--43060	26	2.0	26	88	0	79	26	20	22	30	1.98
40558--55553	896	16.6	895	75	10	10919	25	23	24	26	2.00
46158--55553	881	10.6	895	83	6	10309	26	23	23	26	2.00
53915--53967	26	2.0	26	88	0	79	28	22	20	28	1.99
54811--54863	26	2.0	26	92	0	88	30	26	16	26	1.97
56152--58034	897	2.1	885	88	3	2739	25	23	24	26	2.00
57901--57953	26	2.0	26	88	0	79	28	22	20	28	1.99

Tables:   1

The End!