genome.fa.s9.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167834.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85169

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100--128	13	2.2	13	100	0	58	37	6	6	48	1.57
253--294	14	2.8	15	82	10	50	59	0	0	40	0.97
1248--1285	17	2.2	17	86	9	51	42	0	2	55	1.14
1902--1946	18	2.5	18	81	0	54	40	6	0	53	1.27
2266--2323	23	2.5	22	78	13	55	51	1	3	43	1.28
2319--2364	23	2.0	24	86	4	67	52	0	2	45	1.13
2389--2453	14	4.9	14	71	25	52	47	0	1	50	1.10
2390--2455	21	3.6	18	74	18	55	46	0	1	51	1.10
2478--2538	22	2.8	22	83	16	67	50	0	0	49	1.00
2628--2668	16	2.5	17	80	11	50	58	0	0	41	0.98
2655--2696	19	2.2	20	86	4	59	57	2	2	38	1.25
3853--3911	17	3.7	15	79	20	59	59	1	0	38	1.08
3886--3929	16	2.9	15	83	12	54	61	2	0	36	1.09
3951--4003	19	2.9	18	76	20	56	52	0	1	45	1.11
4547--4585	21	1.9	20	84	5	51	51	7	2	38	1.44
4569--4627	18	3.4	17	77	13	57	55	3	0	40	1.16
5696--5748	24	2.3	22	75	18	54	52	1	1	43	1.23
6690--7076	177	2.2	180	81	2	440	41	8	8	41	1.65
7695--9268	181	8.8	181	73	9	1030	42	9	8	39	1.67
7695--9278	359	4.4	356	75	10	1201	42	9	8	40	1.67
9498--9523	5	5.2	5	100	0	52	38	0	0	61	0.96
10156--10196	17	2.3	18	76	19	50	43	2	0	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11085--11147	31	2.0	32	87	9	94	42	0	4	52	1.22
12101--12152	27	1.9	27	84	7	70	46	0	0	53	1.00
12099--12145	23	2.0	23	83	0	58	48	0	0	51	1.00
12271--12311	19	2.2	19	91	4	66	53	2	0	43	1.13
12295--12354	23	2.5	25	84	13	81	50	0	0	50	1.00
12296--12344	15	3.2	16	78	18	52	48	0	0	51	1.00
12297--12368	23	3.0	24	78	11	69	48	0	1	50	1.09
12555--13114	180	3.1	179	77	6	450	42	10	7	40	1.67
13552--13998	180	2.5	180	78	7	432	44	9	7	38	1.65
14034--14451	181	2.3	181	79	6	425	41	11	7	39	1.69
15800--15867	28	2.5	26	83	11	75	47	1	1	50	1.19
16851--16924	31	2.3	34	81	9	93	48	4	1	45	1.29
17032--17095	24	2.6	24	71	11	58	46	1	0	51	1.10
17089--17129	21	2.0	21	85	9	57	58	0	0	41	0.98
17518--17567	15	3.2	15	78	16	57	58	0	0	42	0.98
17512--17572	24	2.5	24	78	7	61	55	0	0	44	0.99
17945--18432	181	2.7	180	79	6	538	41	7	9	41	1.66
18612--18649	14	2.7	14	84	8	51	57	0	2	39	1.12
18660--18778	13	8.7	13	70	21	50	43	1	0	53	1.16
18847--18895	13	3.6	14	77	17	50	48	2	0	48	1.12
19472--19518	21	2.2	22	81	11	53	46	2	0	51	1.13
19644--19699	20	2.8	20	81	10	69	46	1	3	48	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21156--21216	22	3.0	20	77	17	54	42	1	3	52	1.27
21328--21420	6	15.8	6	71	20	63	46	2	2	49	1.26
21337--21538	28	7.6	27	71	22	119	48	1	1	49	1.19
21347--21420	11	6.9	11	72	18	50	47	1	2	48	1.24
21394--21455	16	3.9	16	71	22	51	40	1	1	56	1.19
22347--22696	181	1.9	178	79	6	384	42	8	8	41	1.63
22550--22825	143	1.9	146	82	5	346	40	7	9	42	1.66
22564--22857	146	2.0	143	81	4	340	39	7	10	41	1.68
23749--23853	54	2.0	53	81	12	126	47	1	2	47	1.27
24111--24151	17	2.3	18	76	19	50	43	2	0	53	1.13
24347--24382	13	2.6	14	86	4	56	47	0	0	52	1.00
25030--25108	16	5.4	15	72	20	53	48	2	2	46	1.29
25021--25108	43	2.0	45	84	8	119	50	2	2	45	1.27
25845--25888	21	2.1	21	91	4	72	59	0	0	40	0.98
26241--26293	18	2.9	18	86	5	70	49	3	0	47	1.19
26278--26368	23	4.0	23	75	15	82	46	1	2	50	1.20
27874--27934	24	2.6	23	78	17	63	44	1	1	52	1.20
28049--28086	20	1.9	20	94	0	67	44	7	0	47	1.32
28436--28485	20	2.6	19	79	14	50	34	4	4	58	1.36
28437--28512	21	3.5	21	75	16	66	36	3	3	55	1.37
28680--28722	15	2.8	16	82	7	52	46	0	0	53	1.00
29995--30163	25	7.1	25	72	15	135	43	10	11	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30008--30138	46	2.8	46	87	4	192	43	9	12	34	1.75
30148--30187	21	1.9	21	94	0	71	35	7	20	37	1.81
30208--30248	20	2.0	20	90	0	64	31	14	21	31	1.94
31471--31518	15	3.3	15	82	8	55	16	2	2	79	0.93
31727--31854	68	1.9	69	85	4	179	56	7	12	23	1.62
33203--33243	19	2.2	19	86	0	55	46	0	4	48	1.23
33582--34162	182	3.2	175	82	6	610	39	7	9	43	1.65
34209--34237	9	3.3	9	95	4	51	58	0	0	41	0.98
35279--35351	22	3.2	22	78	3	83	45	8	8	38	1.64
35512--35629	22	5.4	22	74	8	89	44	9	7	38	1.65
35811--35859	22	2.2	22	85	0	62	48	6	6	38	1.53
35920--35962	22	2.0	22	85	0	59	44	2	6	46	1.43
37533--37572	19	2.2	19	86	4	55	75	0	5	20	0.99
37532--37578	19	2.4	20	79	13	53	74	0	6	19	1.03
61402--61436	16	2.2	16	94	0	61	31	8	14	45	1.75
64660--64699	21	1.9	21	89	0	62	32	17	17	32	1.93
64788--70414	479	11.8	466	79	8	3858	31	12	17	38	1.86
66223--70414	479	8.8	479	85	2	4945	31	12	17	38	1.87
66223--70414	959	4.4	957	84	3	5004	31	12	17	38	1.87
70165--70664	250	2.0	249	86	3	700	31	11	19	38	1.87
70441--71512	419	2.6	419	91	1	1736	30	11	18	39	1.86
71520--74740	479	6.8	478	83	4	4025	31	13	16	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71520--74744	946	3.4	947	83	5	3962	31	13	16	37	1.88
74738--76623	477	3.9	476	82	5	2216	31	13	16	37	1.88
77652--77750	40	2.5	40	98	0	189	24	8	20	47	1.77
78209--78882	333	2.0	334	91	1	1082	29	12	19	39	1.87
79441--85169	479	11.9	478	83	4	6558	31	12	17	39	1.87

Tables:   1

The End!