genome.fa.s91.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167916.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_180, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57036

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--3794	181	21.5	181	73	11	2106	42	10	7	39	1.68
1342--1735	150	2.5	157	78	14	376	40	11	7	40	1.70
108--3790	719	5.2	700	74	11	2193	42	10	7	39	1.68
5296--7229	180	10.8	181	76	8	1458	40	8	9	41	1.69
5324--7229	355	5.3	349	73	12	1047	40	8	9	41	1.69
5330--6665	536	2.5	533	79	8	1369	40	9	9	40	1.70
7394--7783	181	2.1	183	82	3	466	40	8	9	41	1.69
7547--7989	241	1.8	242	81	1	548	40	10	9	39	1.73
7783--8700	181	5.1	179	77	8	730	41	10	9	39	1.71
8743--9002	139	1.9	139	80	4	308	46	8	8	36	1.65
9795--10119	171	1.9	173	81	6	399	44	9	8	37	1.68
8864--13761	181	27.4	181	75	7	3450	41	10	8	39	1.69
8892--13694	359	13.4	357	74	9	2489	41	10	8	39	1.69
13274--13607	176	1.9	176	79	7	383	42	9	8	39	1.68
14015--14055	18	2.3	18	87	8	57	70	2	0	26	0.99
13912--17538	181	20.2	182	74	8	2208	41	10	8	39	1.69
13912--16849	539	5.5	535	74	9	1541	41	10	8	39	1.70
13914--16919	897	3.4	891	77	8	2415	41	10	8	39	1.70
18694--18735	19	2.3	18	84	12	50	69	4	0	26	1.08
18591--22385	181	21.2	181	74	8	2114	42	10	8	39	1.68
18626--22385	358	10.5	357	73	9	2244	42	10	7	39	1.68
18593--22386	898	4.2	886	75	9	2526	42	10	7	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18578--22386	897	4.3	880	76	9	2700	41	10	8	39	1.68
21345--21674	165	2.0	165	96	1	610	41	11	7	39	1.70
23689--23720	15	2.0	17	88	11	50	59	18	15	6	1.57
24279--24311	18	1.9	17	88	11	50	48	3	6	42	1.43
24265--27559	181	18.4	180	76	7	2354	40	8	9	41	1.68
24279--27540	540	6.1	539	77	8	2386	40	8	9	41	1.68
26671--27008	168	2.0	169	82	5	416	41	8	7	42	1.63
27555--28753	181	6.7	179	78	6	1008	39	8	10	41	1.70
27555--28753	358	3.3	356	78	6	1063	39	8	10	41	1.70
28262--29230	490	2.0	489	84	3	1259	39	8	10	42	1.69
28750--31535	181	15.5	181	76	6	2133	40	8	9	41	1.67
30793--31120	175	1.9	177	79	6	378	38	9	9	42	1.70
28753--31724	535	5.6	530	75	8	2148	40	8	9	41	1.67
31698--31751	27	2.0	27	88	0	81	46	7	9	37	1.64
31922--31957	19	1.9	19	88	5	56	41	8	8	41	1.65
31974--36720	181	26.5	180	77	6	3547	41	9	8	40	1.68
31974--36720	359	13.2	356	75	7	3111	41	9	8	40	1.68
37378--39882	181	14.5	164	71	16	608	41	7	8	41	1.64
38207--41302	180	17.4	180	75	9	1985	40	8	9	41	1.68
38462--38776	165	1.9	166	81	3	384	41	8	8	40	1.67
37343--48130	361	30.4	358	74	9	6666	40	8	9	41	1.67
41350--48282	181	38.8	181	75	8	4822	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41646--48017	721	8.9	708	73	11	2819	40	8	9	41	1.68
48280--50680	360	6.7	355	77	8	2033	39	7	10	41	1.68
48294--53826	181	30.4	181	72	10	2954	40	8	10	41	1.68
50544--50815	140	1.9	140	82	1	339	45	6	8	38	1.62
50765--50813	17	2.8	18	78	15	66	46	0	10	42	1.37
51205--53826	360	7.3	360	76	6	2041	40	8	10	41	1.70
52844--52875	16	2.0	16	93	0	55	43	3	15	37	1.63
48294--53826	541	10.1	538	72	10	2821	40	8	10	41	1.68

Tables:   1

The End!