genome.fa.s93.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167918.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_182, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56680

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1772--1824	26	2.0	26	100	0	106	26	26	20	26	1.99
1--4299	894	4.8	892	86	4	5700	26	24	23	25	2.00
5324--5348	9	2.8	9	100	0	50	0	28	72	0	0.86
7243--7512	58	4.7	57	91	5	420	34	12	8	44	1.73
7243--7531	59	5.0	59	90	5	448	33	12	8	45	1.72
7539--7596	14	4.2	14	76	8	57	77	1	6	13	1.05
7546--7596	17	2.9	17	76	21	52	78	1	5	13	1.02
7583--7622	17	2.4	16	84	8	53	72	0	5	22	1.04
8034--8079	20	2.3	20	92	0	74	10	15	23	50	1.75
8744--8788	3	15.0	3	82	17	58	68	2	0	28	1.01
8989--9044	9	6.3	9	80	12	71	0	0	12	87	0.54
8989--9045	8	6.9	8	79	20	64	0	0	14	85	0.59
8989--9045	17	3.4	17	83	11	73	0	0	14	85	0.59
9055--9196	41	3.5	41	85	0	194	35	25	15	23	1.94
9170--9222	26	2.0	26	96	0	97	35	28	15	20	1.93
9196--9414	42	5.3	42	92	3	365	36	22	18	21	1.95
9088--9305	109	2.0	108	91	0	355	36	25	16	22	1.94
9200--9414	83	2.6	84	92	4	357	35	23	19	21	1.96
10641--10686	16	2.9	15	81	18	58	0	15	2	82	0.76
10624--10699	28	2.8	26	78	13	73	5	17	1	76	1.04
10645--10685	13	3.2	12	83	10	55	0	14	2	82	0.76
10672--10710	20	2.0	20	89	0	60	10	23	0	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15228--15263	3	12.0	3	88	11	56	69	0	0	30	0.89
16094--16146	26	2.0	26	96	0	97	26	24	20	28	1.99
16969--17021	26	2.0	26	92	0	88	28	24	18	28	1.98
15380--19194	876	4.3	879	87	4	5173	25	24	23	25	2.00
18738--18790	26	2.0	26	100	0	106	26	26	20	26	1.99
15380--19194	879	4.3	875	87	4	5340	25	24	23	25	2.00
19562--19614	26	2.0	26	92	0	88	30	26	18	24	1.98
18881--20759	847	2.1	858	83	7	2225	24	24	24	25	2.00
25125--25177	26	2.0	26	88	0	79	32	26	16	24	1.97
26026--26081	26	2.2	26	96	0	103	30	23	19	26	1.98
23368--29154	900	6.5	901	86	3	7452	25	24	24	25	2.00
26931--26983	26	2.0	26	100	0	106	26	26	20	26	1.99
27829--27881	26	2.0	26	100	0	106	30	26	16	26	1.97
28543--29791	626	2.0	626	84	4	1652	22	25	26	25	2.00
30250--30302	26	2.0	26	100	0	106	26	26	20	26	1.99
29162--31051	893	2.1	892	88	1	2827	25	23	24	26	2.00
33684--33736	26	2.0	26	92	0	88	28	24	18	28	1.98
31210--37514	900	7.1	898	86	3	7970	25	24	24	25	2.00
37277--37328	26	2.0	26	96	0	95	26	25	19	28	1.98
37595--37647	26	2.0	26	100	0	106	26	26	20	26	1.99
40355--40404	14	3.2	16	81	18	61	52	0	2	46	1.12
41602--41642	16	2.4	18	84	12	59	36	0	2	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40373--42222	936	2.0	911	91	3	2963	40	7	8	44	1.62
42385--42845	180	2.6	179	81	4	534	41	8	9	40	1.68
44028--44066	19	2.1	19	90	0	60	33	0	2	64	1.08
44027--44071	19	2.5	18	82	10	56	33	0	2	64	1.06
44138--44179	17	2.4	18	84	8	59	35	0	2	61	1.09
45074--45115	17	2.4	18	84	8	59	35	0	2	61	1.09
46108--46157	14	3.2	16	81	18	61	52	0	2	46	1.12
47788--47837	14	3.2	16	81	18	61	52	0	2	46	1.12
47986--48024	19	2.1	19	85	0	51	30	2	2	64	1.21
48101--48135	16	2.1	17	94	5	63	31	0	0	68	0.90
49029--49065	17	2.1	18	90	5	58	32	0	0	67	0.91
50485--50894	180	2.3	176	83	4	482	39	9	9	41	1.71
50832--50864	18	1.9	17	88	11	50	36	9	6	48	1.60
51752--51801	14	3.2	16	81	18	61	52	0	2	46	1.12
52061--52102	17	2.4	18	84	8	59	35	0	2	61	1.09
52960--52984	13	1.9	13	100	0	50	52	0	0	48	1.00
52998--53034	17	2.1	18	90	5	58	32	0	0	67	0.91
54424--54865	174	2.5	176	82	5	496	40	9	9	40	1.69
54811--54843	18	1.9	17	88	11	50	36	9	6	48	1.60
54477--54949	175	2.7	175	81	5	468	39	9	8	41	1.69
55594--55635	17	2.4	18	84	8	59	35	0	2	61	1.09

Tables:   1

The End!