genome.fa.s97.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167922.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_186, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56098

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9310--9584	58	4.7	57	86	7	376	34	13	8	43	1.75
9373--9460	27	3.1	27	63	15	68	35	13	6	44	1.71
9310--9583	117	2.3	115	89	8	403	34	13	8	43	1.75
9601--9696	5	18.6	5	73	18	65	77	2	2	18	0.97
9601--9693	48	2.0	47	83	8	118	76	2	2	19	0.99
9639--9692	12	4.3	12	81	9	56	79	1	0	18	0.82
9601--9704	48	2.2	46	81	8	113	75	1	3	18	1.04
9601--9704	47	2.2	45	79	12	104	75	1	3	18	1.04
9727--9778	20	2.7	19	91	5	86	82	0	0	17	0.66
9730--9778	24	2.1	23	92	3	80	83	0	0	16	0.64
9727--9771	4	11.5	4	84	13	58	80	0	0	20	0.72
10148--10200	26	2.0	26	96	0	97	28	24	20	26	1.99
11048--11100	26	2.0	26	92	0	88	30	24	18	26	1.98
11946--11998	26	2.0	26	96	0	97	28	26	18	26	1.98
9949--13323	885	3.8	886	85	3	4397	25	24	24	26	2.00
12823--12875	26	2.0	26	92	0	88	24	24	20	30	1.99
13510--13562	26	2.0	26	96	0	97	24	26	20	28	1.99
12645--13981	687	1.9	677	85	4	1820	23	23	25	27	2.00
14400--14451	25	2.0	26	88	3	79	28	25	19	26	1.98
16185--16236	25	2.0	26	85	3	70	28	21	21	28	1.98
17081--17133	26	2.0	26	88	0	79	24	22	24	28	2.00
13328--21427	889	9.1	888	84	4	10103	25	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19743--19794	26	2.0	26	92	3	88	26	28	19	25	1.98
20638--20690	26	2.0	26	96	0	97	26	24	20	28	1.99
18869--21403	896	2.8	896	87	3	3424	26	24	23	26	2.00
23000--23052	26	2.0	26	96	0	97	26	24	20	28	1.99
22119--24764	856	3.0	881	85	5	3187	26	24	23	26	2.00
24967--26459	717	2.1	716	87	2	2169	26	24	22	26	2.00
34002--34054	26	2.0	26	92	0	88	24	24	20	30	1.99
35779--35831	26	2.0	26	96	0	97	26	24	20	28	1.99
33138--36400	889	3.7	881	88	3	4774	26	24	23	25	2.00
36491--39102	881	3.0	869	85	6	3352	25	24	23	25	2.00
40028--40087	26	2.4	26	86	5	88	26	26	20	26	1.99
39254--41778	904	2.8	892	86	4	3367	26	24	23	24	2.00
40932--40984	26	2.0	26	85	0	70	28	28	18	24	1.98
41774--44985	875	3.7	870	88	3	4590	26	24	24	25	2.00
45007--48858	874	4.4	874	86	3	5042	25	23	24	26	2.00
48363--48415	26	2.0	26	96	0	97	26	24	20	28	1.99
51377--51406	4	7.5	4	92	0	51	3	73	23	0	0.98
52461--52511	26	2.0	26	92	0	84	25	23	19	31	1.98
50877--56092	872	5.9	876	85	3	6683	25	24	23	26	2.00

Tables:   1

The End!