genome.fa.s98.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167923.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55919

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4500--4888	45	8.7	44	79	6	361	19	31	31	16	1.94
4503--4928	135	3.2	134	79	2	424	19	30	32	16	1.95
10922--11081	45	3.6	45	73	7	119	20	31	25	23	1.98
11015--11343	45	7.3	45	75	2	167	19	30	28	22	1.98
10872--11338	180	2.6	180	80	1	488	19	29	27	22	1.98
11229--11536	90	3.4	90	77	3	332	19	30	29	21	1.97
11178--11384	45	4.6	45	80	0	180	19	31	28	20	1.97
11371--11489	45	2.6	45	75	10	118	21	31	25	21	1.98
11458--11662	113	1.8	113	81	2	259	18	32	30	19	1.95
18799--18906	45	2.4	45	84	0	144	22	28	25	23	1.99
19116--19271	45	3.5	43	81	6	161	16	33	32	17	1.92
21725--21753	9	3.2	9	100	0	58	34	10	34	20	1.87
29842--29894	26	2.0	26	92	0	88	24	22	24	28	2.00
42825--42877	26	2.0	26	96	0	97	28	16	24	30	1.97
42845--43415	171	3.3	170	77	5	513	23	27	25	23	2.00
44099--44123	13	1.9	13	100	0	50	24	16	36	24	1.94
44130--44927	45	17.7	45	72	5	470	18	31	29	20	1.96
44255--44906	225	2.9	223	81	2	759	18	31	29	20	1.96
49859--50663	45	17.9	45	74	3	434	17	29	30	21	1.96
49870--50671	90	8.9	90	75	2	588	17	29	30	21	1.97
49870--50663	135	5.9	135	74	4	569	17	29	30	22	1.96
49889--50684	225	3.5	222	78	5	814	18	29	30	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50722--50830	45	2.4	45	83	3	121	18	35	25	20	1.95

Tables:   1

The End!