genome.fa.s1023.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  443046

Tables:   1   2   

This is table  1  of  2  ( 231 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955--1007	3	17.7	3	92	0	88	62	0	3	33	1.13
3185--3223	20	2.0	20	100	0	78	20	15	33	30	1.94
7816--7864	25	1.9	25	84	12	64	32	2	10	55	1.45
11351--11375	12	2.1	12	100	0	50	16	8	16	60	1.58
16575--16632	22	2.6	22	80	0	62	17	25	15	41	1.89
16603--16664	29	2.1	29	93	0	106	14	19	22	43	1.87
16630--16685	22	2.6	21	77	5	58	17	17	19	44	1.87
20440--20484	22	2.0	22	86	4	63	37	17	6	37	1.76
23417--23441	5	5.0	5	100	0	50	80	0	0	20	0.72
23681--23713	9	3.7	9	84	15	50	81	9	0	9	0.87
23710--23805	30	3.2	30	94	1	167	35	26	2	36	1.68
23710--23825	59	2.0	60	89	1	180	33	25	3	37	1.73
23710--23825	30	3.9	30	84	8	148	33	25	3	37	1.73
24151--24198	3	16.0	3	95	0	87	68	0	31	0	0.90
24152--24208	9	6.2	9	88	8	62	71	0	26	1	0.95
25088--25129	20	2.0	22	86	9	61	42	16	2	38	1.61
25120--25442	18	17.6	19	72	14	207	32	13	10	43	1.78
25069--25224	77	2.1	76	80	9	176	37	12	8	40	1.75
25120--25442	37	8.8	36	73	12	178	32	13	10	43	1.78
25222--25314	35	2.6	36	86	3	134	27	15	11	45	1.81
32253--34279	77	26.2	78	84	8	2022	26	17	19	36	1.94
32253--34283	78	26.3	79	86	6	2304	26	17	19	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32253--34283	155	13.1	156	85	7	2179	26	17	19	36	1.94
34417--34442	10	2.6	10	100	0	52	92	0	0	7	0.39
34439--34615	30	5.9	30	84	2	221	35	24	3	36	1.73
34440--34615	90	2.0	90	88	0	262	34	25	3	36	1.73
34935--34979	20	2.2	20	88	0	63	68	0	31	0	0.89
34945--35019	7	10.1	7	75	16	71	80	0	17	2	0.84
34945--35019	15	5.1	14	75	15	71	80	0	17	2	0.84
35033--35089	5	11.0	5	77	7	60	22	50	24	1	1.58
35033--35071	10	3.9	10	96	0	69	25	51	23	0	1.49
35168--35228	24	2.5	25	81	10	72	27	37	24	9	1.87
35615--35678	17	3.6	17	74	17	60	35	12	7	43	1.71
35618--35656	18	2.2	18	90	9	62	43	10	10	35	1.73
35618--35656	19	2.1	18	90	4	60	43	10	10	35	1.73
35908--35949	20	2.0	22	86	9	61	42	16	2	38	1.61
35940--36210	18	14.6	18	72	12	176	32	13	11	43	1.79
35889--36043	76	2.1	75	81	8	181	37	12	9	40	1.75
35967--36209	54	4.4	55	81	6	269	32	13	11	41	1.81
37865--37925	32	1.9	32	90	6	97	45	16	9	27	1.79
40697--41111	17	23.7	16	67	14	89	48	9	11	30	1.71
40695--40787	34	2.6	34	77	9	98	45	7	8	38	1.63
40745--40975	53	4.4	51	72	15	150	47	11	12	29	1.75
40911--41025	53	2.1	54	82	4	135	52	9	10	27	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40956--41028	37	2.0	36	84	7	94	53	9	10	26	1.66
40766--41185	18	23.4	18	67	17	153	47	10	12	29	1.75
40695--41181	36	13.7	35	70	17	170	47	10	11	31	1.73
41510--41598	8	10.6	8	74	20	51	2	19	0	78	0.85
41509--41604	10	8.7	11	76	15	92	2	18	0	79	0.84
41526--41605	43	1.9	39	87	9	115	3	18	0	77	0.92
41526--41605	40	2.0	42	85	9	112	3	18	0	77	0.92
41801--41836	12	3.0	12	87	0	54	2	19	55	22	1.56
41989--42045	9	6.7	9	78	15	50	1	33	0	64	1.04
42015--42045	16	1.9	16	93	0	53	3	29	0	67	1.06
42021--42060	18	2.2	18	86	8	55	5	27	0	67	1.11
42289--42428	30	4.8	29	80	6	138	40	3	18	37	1.68
42613--44247	78	21.1	76	84	8	1638	36	20	16	27	1.93
42613--44237	153	10.5	150	83	8	1671	36	20	16	27	1.93
42613--44247	319	5.3	307	86	8	1870	36	20	16	27	1.93
42613--44237	76	20.9	80	83	9	1562	36	20	16	27	1.93
43484--44237	147	5.0	148	93	2	1170	36	20	15	27	1.93
55676--55741	34	2.0	34	84	3	89	46	4	7	40	1.52
55715--56241	18	29.4	18	70	15	283	46	10	12	30	1.76
55682--56129	53	8.5	51	73	8	242	46	10	11	31	1.74
55803--56095	17	16.8	16	74	10	120	48	10	10	30	1.73
56566--56671	22	4.8	22	79	9	110	1	17	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56569--56671	30	3.4	29	75	18	104	1	18	0	79	0.82
56574--56671	43	2.3	42	86	8	128	2	19	0	78	0.85
57005--57053	16	3.0	16	90	3	71	2	32	0	65	1.04
57260--57418	30	5.4	28	75	8	111	42	8	16	32	1.79
57370--57425	29	2.0	28	85	3	76	44	7	19	28	1.77
78062--78109	18	2.6	19	87	6	73	35	6	0	58	1.23
81699--81772	9	8.3	9	88	8	116	78	9	1	10	1.03
81785--81838	6	9.0	6	88	8	83	83	0	16	0	0.65
82636--82682	16	2.7	18	90	9	80	76	0	10	12	1.02
82636--82682	18	2.7	18	87	9	71	76	0	10	12	1.02
82636--82682	17	2.8	17	84	12	69	76	0	10	12	1.02
82644--82696	16	3.3	16	76	10	54	77	0	9	13	0.99
82782--82826	21	2.1	21	91	0	72	28	13	35	22	1.92
83879--84791	88	10.4	88	93	0	1477	26	23	25	24	2.00
84829--85084	132	1.9	132	84	3	345	28	17	21	31	1.97
86784--86832	18	2.8	18	79	14	66	34	8	0	57	1.29
89796--89886	18	5.2	18	85	5	123	28	25	15	30	1.96
89796--89888	36	2.7	34	91	3	150	29	24	16	30	1.96
106948--107034	18	5.0	17	84	5	120	32	13	25	28	1.94
106948--107034	35	2.5	35	96	0	156	32	13	25	28	1.94
116117--116408	46	6.5	46	92	2	459	28	22	15	32	1.95
116117--116408	91	3.2	91	92	2	466	28	22	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118447--118488	21	2.0	21	85	0	57	45	11	4	38	1.62
119092--119118	9	3.0	9	100	0	54	44	0	0	55	0.99
119451--119482	17	2.0	17	88	11	50	62	15	21	0	1.32
120060--120209	45	3.3	45	84	3	194	20	18	20	42	1.90
120189--120237	6	7.8	6	86	2	62	18	20	16	44	1.86
124931--125026	24	4.0	25	77	10	103	20	27	18	33	1.96
126623--126692	35	2.0	35	97	0	131	34	18	22	24	1.96
127728--127764	20	1.9	19	89	10	58	43	0	32	24	1.55
128089--128125	9	4.1	9	92	0	65	29	10	13	45	1.77
129199--129333	24	5.5	24	68	23	77	14	24	23	37	1.92
129571--129601	13	2.4	13	94	0	53	48	9	9	32	1.69
130888--131028	42	3.4	42	84	0	174	39	15	26	19	1.91
130891--131057	21	8.0	21	73	4	124	40	16	23	19	1.90
136720--136769	21	2.5	20	83	3	55	24	18	16	42	1.89
140704--140746	22	2.0	22	95	0	77	23	13	9	53	1.69
141831--141946	50	2.3	50	95	4	207	34	8	9	47	1.67
143519--143652	22	5.9	23	72	11	91	35	5	1	56	1.33
143628--143676	24	2.0	24	84	7	64	36	2	2	59	1.21
143528--143678	46	3.3	45	76	9	146	36	5	1	55	1.36
143593--143743	69	2.2	68	77	12	157	35	5	4	53	1.46
148663--148707	23	2.0	23	86	4	65	37	6	17	37	1.76
150233--150263	6	5.2	6	92	0	53	35	0	29	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150233--150269	12	3.1	12	88	0	56	32	0	27	40	1.57
150348--150412	19	3.4	19	79	8	87	23	26	21	29	1.99
150339--150413	38	2.0	38	94	0	132	24	24	21	30	1.99
152142--152177	18	2.0	18	100	0	72	44	5	11	38	1.63
153366--153461	23	4.2	23	81	5	113	23	19	25	31	1.98
153364--153454	46	2.0	46	88	0	137	23	21	24	30	1.99
154907--154946	21	1.9	21	89	0	62	52	2	15	30	1.55
157181--157315	25	5.6	25	81	8	133	17	24	19	39	1.92
157229--157309	22	3.6	21	80	8	72	14	27	18	39	1.90
157399--157457	31	1.9	31	92	0	100	52	3	22	22	1.61

Tables:   1   2