genome.fa.s1023.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Length:  443046

Tables:   1   2   

This is table  2  of  2  ( 231 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159772--159879	44	2.4	44	87	3	144	29	23	13	33	1.93
167011--167118	44	2.4	44	87	3	144	29	23	13	33	1.93
169528--169579	26	2.0	26	85	7	70	44	3	0	51	1.19
169671--169706	16	2.2	17	90	9	58	61	2	0	36	1.11
169739--169795	15	3.5	15	71	17	51	49	1	1	47	1.22
175739--175771	17	1.9	17	93	0	57	18	18	12	51	1.76
179501--179622	52	2.4	51	84	1	154	30	15	18	36	1.92
180868--180923	28	2.0	28	100	0	112	35	7	7	50	1.57
181340--181374	16	2.1	17	89	5	54	71	2	2	22	1.13
183075--183154	7	11.6	7	89	2	117	55	1	3	40	1.26
183484--183517	17	2.0	17	88	0	50	67	5	0	26	1.13
183594--183670	19	3.8	18	73	25	57	38	1	2	57	1.21
184127--184178	9	5.1	10	82	17	63	50	0	0	50	1.00
184128--184178	11	4.9	11	81	18	65	49	0	0	50	1.00
184077--184185	30	3.6	30	75	15	100	39	0	0	59	1.04
184314--184349	16	2.3	15	90	4	54	11	58	30	0	1.33
193579--193616	19	2.0	20	84	5	51	50	0	2	47	1.15
196334--196374	3	13.3	3	94	5	73	2	0	31	65	1.05
196722--196785	17	3.6	17	74	15	67	28	12	12	46	1.78
196714--196782	36	1.9	36	96	0	129	27	13	13	46	1.79
196714--196765	19	2.9	18	72	16	54	26	13	13	46	1.80
199413--199476	17	3.6	17	74	15	67	28	12	12	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199405--199473	36	1.9	36	96	0	129	27	13	13	46	1.79
199405--199456	19	2.9	18	72	16	54	26	13	13	46	1.80
203371--203582	85	2.5	85	82	6	230	34	7	17	41	1.77
216138--216165	8	3.5	8	100	0	56	0	10	0	89	0.49
222133--222202	30	2.4	30	83	7	81	44	1	1	52	1.18
222114--222202	29	3.0	30	77	4	92	46	1	1	51	1.15
222784--222847	27	2.3	27	81	7	76	31	0	3	65	1.08
231547--231600	7	7.7	7	97	0	99	42	1	29	25	1.66
231571--231700	50	2.6	50	92	0	215	34	10	24	30	1.89
232309--232347	18	2.2	18	86	4	53	38	0	17	43	1.50
233593--233706	42	2.5	49	77	19	161	42	3	8	45	1.52
236803--237090	125	2.3	125	91	0	459	29	20	18	31	1.96
238021--238084	32	2.0	32	100	0	128	34	6	12	46	1.67
242455--242488	17	2.1	17	88	5	52	0	11	8	79	0.94
243279--243677	26	15.2	26	73	10	269	29	7	3	59	1.41
243391--243652	57	5.0	55	78	12	202	29	4	4	61	1.34
243523--243568	20	2.3	20	79	17	51	32	2	2	63	1.19
243305--243677	76	4.8	74	72	15	254	29	6	4	59	1.41
250586--250631	20	2.3	20	92	0	74	28	4	15	52	1.61
255163--255208	20	2.3	20	92	0	74	28	4	15	52	1.61
261475--261526	6	8.7	6	91	0	68	23	34	26	15	1.94
261467--261526	12	5.0	12	85	0	75	25	31	28	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263990--264027	14	2.8	13	84	7	58	7	26	15	50	1.72
264000--264049	22	2.3	22	89	0	73	8	24	14	54	1.66
264033--264124	36	2.4	36	84	12	114	23	14	19	42	1.88
264040--264124	39	2.3	36	89	6	125	25	14	20	40	1.90
264299--264332	7	4.9	7	100	0	68	41	44	0	14	1.45
265341--265462	60	2.0	60	100	0	244	29	20	13	36	1.90
267216--267244	13	2.2	13	100	0	58	13	20	0	65	1.26
269286--269360	23	3.3	23	92	3	125	32	28	21	18	1.97
276648--276721	23	3.3	23	94	1	123	33	27	21	17	1.96
278078--278164	44	2.0	45	83	2	113	26	17	27	28	1.97
278142--278286	45	3.2	45	67	16	129	28	22	26	22	1.99
278250--278319	31	2.3	31	92	0	113	30	24	20	25	1.99
278506--278720	88	2.4	88	86	3	236	26	19	25	28	1.98
278551--278690	44	3.2	44	67	8	122	25	19	25	29	1.98
278552--278754	88	2.3	88	88	2	309	26	19	25	28	1.99
282594--282626	12	2.8	12	90	0	57	30	3	0	66	1.06
284536--284572	13	2.7	14	91	4	58	48	5	8	37	1.56
285482--285545	25	2.5	27	76	19	75	26	28	14	31	1.95
285899--285946	24	2.0	24	100	0	96	33	8	8	50	1.63
288225--288432	114	1.8	114	92	0	353	37	22	12	26	1.91
290084--290129	5	9.2	5	95	0	83	36	0	2	60	1.09
292405--292445	5	8.2	5	94	0	73	60	2	0	36	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294675--294723	18	2.7	18	81	12	55	63	0	2	34	1.06
295738--295795	10	6.0	10	76	13	59	58	3	1	36	1.25
295739--295795	19	3.1	18	76	14	62	59	3	1	35	1.25
295819--296446	222	3.0	204	80	9	781	45	10	9	34	1.71
296057--296099	21	2.1	20	82	4	50	62	4	2	30	1.28
296279--296323	20	2.2	21	84	4	56	64	2	4	28	1.25
297854--297882	11	2.7	11	94	5	51	48	0	0	51	1.00
297925--297959	5	6.8	5	93	3	52	0	34	60	5	1.21
298355--298384	11	2.7	11	89	0	51	20	30	3	46	1.66
298362--298461	51	2.0	51	86	7	141	24	25	3	48	1.65
301227--301668	237	1.9	237	87	0	659	33	17	19	29	1.95
306820--306896	29	2.6	29	83	4	91	46	14	14	24	1.81
308155--308180	5	5.2	5	100	0	52	19	0	38	42	1.51
314004--314117	41	2.9	37	81	11	138	57	0	4	38	1.19
314078--314103	11	2.4	11	100	0	52	53	0	7	38	1.30
328734--328890	30	5.3	30	77	13	103	23	24	12	39	1.89
328673--328890	119	1.8	119	89	2	339	21	24	13	40	1.89
336625--336649	3	8.3	3	100	0	50	32	0	0	68	0.90
353524--353553	3	10.0	3	100	0	60	66	0	0	33	0.92
355496--355538	19	2.2	19	83	8	50	25	13	20	39	1.90
358451--358491	20	1.9	23	85	14	61	51	12	12	24	1.73
359461--359504	20	2.2	20	100	0	88	59	0	4	36	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365017--365051	15	2.4	15	90	4	54	48	0	5	45	1.26
370247--370303	28	2.0	28	100	0	114	57	0	28	14	1.37
373405--373439	14	2.6	14	90	4	54	65	0	2	31	1.07
374992--375753	151	5.1	150	87	5	1009	51	6	10	31	1.62
375243--375753	144	3.5	142	85	8	627	51	6	10	31	1.61
391424--391449	3	8.7	3	100	0	52	30	0	0	69	0.89
396110--396135	4	6.5	4	100	0	52	26	0	23	50	1.50
399288--399339	18	2.8	19	77	8	54	69	5	0	25	1.10
399395--399438	22	2.0	22	81	0	52	68	0	2	29	1.02
399865--399958	40	2.4	38	83	7	107	30	5	4	59	1.39
399896--400095	9	21.8	9	67	19	67	30	2	3	64	1.22
399896--399994	19	5.3	17	72	20	74	34	3	2	60	1.23
399907--400025	19	6.3	20	66	18	60	31	1	3	63	1.20
399877--400062	10	19.8	10	67	18	62	31	3	3	61	1.29
400051--400119	20	3.5	19	74	18	61	24	1	2	71	1.09
403830--403884	27	2.0	27	86	6	76	58	0	12	29	1.35
410746--410793	17	2.7	18	81	15	55	43	4	6	45	1.48
417796--417933	69	2.0	69	83	5	172	42	18	15	24	1.88
432762--432804	21	2.0	21	86	0	59	25	13	18	41	1.88
434261--434300	21	1.9	21	100	0	80	52	30	5	12	1.60
436176--436217	3	14.0	3	89	0	66	30	2	2	64	1.19
442697--442806	12	9.9	11	66	19	50	35	3	0	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442697--442804	42	2.4	43	85	10	130	36	3	0	60	1.15

Tables:   1   2

The End!