genome.fa.s1024.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold146
Parameters: 2 7 7 80 10 50 1000
Length:  441899

Tables:   1   2   

This is table  1  of  2  ( 141 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655--770	38	3.1	36	79	12	135	31	28	18	21	1.97
8429--8575	40	3.7	40	83	5	120	25	27	21	25	2.00
8475--8655	80	2.3	80	83	9	219	27	27	20	23	1.99
8472--8655	40	4.6	40	81	7	196	28	27	20	23	1.99
12145--12207	21	3.0	21	88	2	81	33	31	4	30	1.78
12539--12575	15	2.5	15	95	0	65	75	0	13	10	1.04
12538--12579	16	2.7	16	88	3	68	71	0	14	14	1.15
13539--13580	17	2.5	17	80	0	57	78	4	11	4	1.06
14269--14314	20	2.3	20	85	7	58	26	19	17	36	1.94
14261--14334	30	2.5	30	84	8	89	24	20	18	36	1.95
15924--15957	13	2.6	13	86	13	52	79	5	2	11	1.02
15925--15969	12	3.8	12	85	14	58	77	6	4	11	1.09
17021--17125	6	17.7	6	66	12	56	72	2	18	6	1.19
17030--17143	28	4.1	27	74	6	95	71	2	18	7	1.23
17086--17123	13	2.8	13	82	17	51	73	0	18	7	1.06
17007--17123	11	10.0	12	69	21	61	70	2	17	8	1.23
17087--17137	21	2.4	21	74	6	50	74	1	17	5	1.11
17140--17202	33	1.9	33	84	12	85	53	6	26	12	1.62
18978--19031	20	2.7	20	82	0	63	24	20	18	37	1.94
18978--19051	30	2.5	30	86	8	98	21	20	18	39	1.93
18978--19042	20	3.2	20	71	16	53	23	21	16	38	1.93
37555--37612	27	2.1	27	83	3	71	44	13	8	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40491--40543	23	2.4	22	76	20	56	9	18	1	69	1.25
43893--43957	12	5.6	12	76	7	53	67	4	18	9	1.35
43915--44017	6	16.7	6	72	6	71	69	3	19	6	1.27
43902--43972	18	4.1	18	80	3	83	69	5	18	7	1.32
43978--44015	13	2.8	13	82	17	51	73	0	18	7	1.06
43994--44059	27	2.3	29	77	12	75	66	1	22	9	1.28
47031--47208	27	6.6	27	83	3	205	26	15	28	29	1.96
47032--47187	82	1.9	81	88	3	233	26	15	28	29	1.96
47028--47208	82	2.2	81	83	2	229	27	15	27	29	1.96
47960--48056	30	3.2	30	75	2	97	27	25	16	29	1.97
51690--51714	13	1.9	13	100	0	50	32	32	8	28	1.86
55502--55565	30	2.1	30	82	5	76	25	29	14	31	1.94
55521--55578	10	5.7	10	79	4	71	29	29	12	29	1.93
55521--55581	20	3.0	20	83	9	79	27	27	11	32	1.91
58483--58525	22	1.9	23	90	4	70	25	4	32	37	1.77
60131--60177	20	2.3	20	81	0	58	23	12	34	29	1.92
61838--61900	33	1.9	33	84	12	85	12	26	6	53	1.62
61897--61940	13	3.4	12	79	14	52	13	15	0	70	1.17
61915--61958	18	2.4	18	81	7	54	13	15	0	70	1.17
61897--61969	30	2.6	26	87	10	92	13	16	0	69	1.18
61879--61968	12	7.8	12	65	22	50	14	17	1	66	1.31
61959--61995	14	2.4	16	86	13	51	10	24	0	64	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61990--62049	18	3.3	18	78	0	66	5	16	6	71	1.25
61999--62052	12	4.6	12	80	8	58	3	12	5	77	1.07
64565--64607	22	1.9	23	90	4	70	25	4	32	37	1.77
64896--64938	17	2.4	19	81	14	56	13	16	0	69	1.19
64970--65028	18	3.3	18	79	13	68	6	13	6	72	1.25
64928--65046	12	9.9	12	66	19	61	10	17	3	68	1.31
64896--65032	6	21.7	6	65	14	53	10	16	2	70	1.28
67545--67587	22	1.9	23	90	4	70	25	4	32	37	1.77
67949--68007	18	3.3	18	85	0	82	5	15	6	72	1.23
67876--68007	6	20.8	6	67	10	59	9	17	3	69	1.28
72448--72499	23	2.3	22	75	21	54	9	23	1	65	1.32
72457--72511	12	4.6	12	73	15	51	12	23	0	63	1.29
75269--75311	22	1.9	23	90	4	70	25	4	32	37	1.77
76918--76964	20	2.3	20	81	0	58	23	12	34	29	1.92
81182--81257	23	3.4	22	87	8	109	10	13	5	71	1.30
81183--81257	24	3.3	23	92	3	125	10	12	5	72	1.28
81817--81902	43	2.0	43	97	0	163	34	20	17	26	1.95
83760--83797	19	2.0	19	100	0	76	47	10	10	31	1.72
84831--84859	11	2.6	11	100	0	58	13	0	6	79	0.93
87753--87786	17	2.0	17	100	0	68	5	23	29	41	1.78
92621--92749	33	3.6	33	75	18	132	20	20	27	31	1.97
92654--92837	43	4.6	42	73	17	167	21	17	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92620--92795	76	2.3	76	96	0	316	19	19	28	32	1.96
97045--97077	15	2.1	16	88	5	50	9	15	0	75	1.03
97044--97088	21	2.1	21	88	8	65	8	17	0	73	1.08
97709--97762	27	2.0	27	96	0	99	31	14	18	35	1.91
99723--99768	11	4.0	11	81	10	56	71	6	2	19	1.18
99726--99770	12	3.6	13	85	8	58	75	4	2	17	1.07
110384--110594	40	5.3	39	78	6	228	27	28	19	23	1.99
110384--110594	79	2.7	80	87	1	291	27	28	19	23	1.99
110403--110594	80	2.4	79	89	0	303	27	28	20	23	1.99
111503--111556	20	2.7	20	85	0	72	25	20	16	37	1.93
111503--111576	30	2.5	30	84	8	89	22	20	17	39	1.92
111503--111567	20	3.2	20	78	8	69	24	21	15	38	1.92
114277--114347	24	2.8	25	75	8	72	67	1	19	11	1.29
114277--114377	12	8.6	12	65	16	50	68	0	18	11	1.26
114338--114379	19	2.2	19	86	0	57	73	0	14	11	1.09
114354--114398	13	3.4	13	78	6	54	71	2	15	11	1.24
114395--114457	33	1.9	33	84	12	85	55	6	25	12	1.60
116681--116890	40	5.3	39	78	7	219	28	28	19	23	1.98
116681--116875	79	2.5	80	89	1	286	28	28	19	23	1.98
117798--117851	20	2.7	20	85	0	72	25	20	16	37	1.93
117798--117871	30	2.5	30	84	8	89	22	20	17	39	1.92
117798--117862	20	3.2	20	78	8	69	24	21	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119373--119401	10	2.9	10	100	0	58	82	6	0	10	0.83
119471--119496	12	2.2	12	100	0	52	76	7	0	15	0.99
119508--119549	14	2.9	15	82	7	59	76	0	16	7	1.00
119499--119545	13	3.5	14	81	13	55	80	0	12	6	0.88
119490--119520	10	3.1	10	95	0	53	87	0	9	3	0.66
119490--119562	35	2.1	35	87	10	105	79	0	13	6	0.92
120557--120634	15	5.3	15	74	10	56	74	0	19	6	1.03
120558--120662	39	2.6	41	79	8	108	73	0	19	6	1.11
120665--120727	33	1.9	33	84	12	85	55	6	25	12	1.60
122494--122547	20	2.7	20	82	0	63	24	20	18	37	1.94
122494--122567	30	2.5	30	86	8	98	21	20	18	39	1.93
122494--122558	20	3.2	20	71	16	53	23	21	16	38	1.93
124407--124587	37	4.6	39	81	12	185	24	22	28	23	1.99
334793--334839	20	2.3	20	85	0	67	21	14	34	29	1.93
358902--358947	25	1.9	23	86	8	65	15	15	10	58	1.63
361977--362023	20	2.3	20	85	0	67	21	12	36	29	1.91
363691--363796	48	2.2	48	85	9	137	14	24	1	59	1.45
365899--365928	10	2.9	10	95	5	51	80	6	3	10	1.01
366003--366036	10	3.3	11	88	12	54	76	8	0	14	1.01
365990--366046	20	2.8	20	78	0	60	78	5	7	8	1.07
367085--367183	12	8.6	12	65	20	50	66	1	19	13	1.30
367138--367186	17	2.7	18	81	9	64	67	0	18	14	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367118--367184	29	2.4	27	85	9	91	70	0	17	11	1.17
374291--374353	10	5.9	10	73	14	54	34	33	1	30	1.67
374286--374350	22	2.9	22	88	2	85	36	33	1	27	1.67
379811--379854	22	2.0	22	95	0	79	25	36	4	34	1.76
385012--385077	33	2.0	33	82	8	80	33	16	22	27	1.96
387263--387327	22	2.9	22	84	6	78	35	32	3	29	1.73
387749--387809	26	2.3	25	78	15	61	4	18	4	72	1.21
391408--391444	10	3.6	10	89	7	56	8	5	5	81	0.99
392720--392792	29	2.5	29	90	0	110	46	10	9	32	1.71
397580--397641	10	5.9	10	74	10	52	33	30	3	32	1.74

Tables:   1   2