genome.fa.s1072.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3245
Parameters: 2 7 7 80 10 50 1000
Length:  52093

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1221--1328	44	2.4	44	87	3	144	29	23	13	33	1.93
8565--8672	44	2.4	44	87	3	144	29	23	13	33	1.93
18086--18149	29	2.2	29	91	2	103	21	14	15	48	1.80
18417--18609	97	2.0	97	97	0	368	29	18	23	29	1.98
20049--20276	124	1.8	124	89	1	359	31	17	20	31	1.95
20179--20371	97	2.0	97	96	0	359	29	18	23	29	1.97
21808--22035	124	1.8	124	92	1	386	30	17	21	30	1.96
21938--22130	97	2.0	97	97	0	368	29	19	22	29	1.98
23381--23433	27	1.9	27	84	3	70	22	16	16	43	1.88
23699--23890	96	2.0	97	96	1	359	29	18	23	28	1.98
25329--25556	124	1.8	124	89	1	359	29	17	21	30	1.96
25459--25651	97	2.0	97	95	0	350	29	18	23	29	1.98
28775--29062	55	5.2	55	97	0	531	46	4	12	36	1.61
28775--29062	111	2.6	111	96	1	533	46	4	12	36	1.61
29056--29332	29	9.7	29	85	3	346	22	1	29	46	1.59
29056--29332	88	3.2	86	86	5	364	22	1	29	46	1.59
29275--29336	25	2.6	23	89	5	88	22	1	27	48	1.60
29451--29683	56	4.2	56	97	1	425	46	4	12	36	1.61
29451--29683	111	2.1	111	95	1	414	46	4	12	36	1.61
29677--29953	29	9.7	29	86	3	355	23	1	29	46	1.59
29677--29953	88	3.2	86	86	5	373	23	1	29	46	1.59
29896--29957	25	2.6	23	89	5	88	22	1	27	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28830--31176	621	3.8	620	91	4	3910	33	4	19	42	1.70
29506--31067	565	2.7	566	88	7	2349	33	4	19	42	1.70
30072--30248	55	3.2	55	93	3	302	46	3	11	37	1.58
30242--30547	29	10.7	29	85	4	361	22	1	29	46	1.61
30242--30547	117	2.7	117	87	4	419	22	1	29	46	1.61
30666--30896	55	4.2	55	97	1	410	44	4	12	38	1.63
30072--31244	648	1.8	649	95	0	2154	32	3	19	43	1.70
30898--31195	29	10.4	29	86	5	363	20	0	30	48	1.54
30900--31173	117	2.3	117	91	1	424	19	0	30	49	1.54
31138--31204	25	2.8	24	86	8	93	23	2	25	47	1.66
31713--31747	18	1.9	18	88	0	52	31	8	34	25	1.86
32399--32437	7	5.6	7	96	0	69	61	12	0	25	1.31
32580--32617	20	1.9	20	84	10	51	55	7	2	34	1.43
33548--33671	51	2.4	51	89	2	187	43	0	25	29	1.60
33654--33698	11	4.0	11	91	2	63	51	0	31	17	1.46
33651--33697	22	2.1	22	92	4	76	48	0	34	17	1.47
33963--34024	28	2.2	28	82	5	81	45	12	16	25	1.83
42760--42786	2	13.5	2	100	0	54	51	0	0	48	1.00

Tables:   1

The End!