genome.fa.s1361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1415
Parameters: 2 7 7 80 10 50 1000
Length:  33996

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3734--3826	42	2.2	43	90	3	143	19	39	27	12	1.88
3814--3862	25	2.0	25	91	0	80	18	46	22	12	1.82
3839--4876	43	24.6	42	77	8	858	18	33	32	16	1.93
3861--3938	33	2.3	34	93	4	131	19	37	35	7	1.80
3946--4863	85	10.8	85	83	3	761	17	33	32	16	1.93
3839--4738	256	3.6	254	85	4	1085	18	33	32	16	1.93
4072--4805	299	2.5	298	92	2	1190	17	32	32	16	1.93
4881--4959	24	3.3	24	85	5	106	20	35	37	6	1.78
5168--5459	42	6.9	42	82	8	335	19	34	28	17	1.95
13360--13452	42	2.2	43	90	3	143	19	39	27	12	1.88
13439--13487	24	2.0	24	92	0	80	18	48	22	10	1.77
13463--14501	43	24.6	41	76	7	784	17	33	32	16	1.93
13486--13564	34	2.3	34	93	2	131	18	37	35	7	1.80
13572--14488	85	10.8	84	82	5	716	17	33	32	17	1.93
13493--14501	128	8.0	128	77	6	911	17	33	32	16	1.93
13698--14430	298	2.5	298	92	2	1181	17	33	32	16	1.93
14506--14584	24	3.3	24	85	5	106	20	35	37	6	1.78
14793--15042	42	5.9	42	79	9	269	20	34	28	17	1.95
26544--26636	42	2.2	43	90	3	143	19	39	27	12	1.88
26624--26672	25	2.0	25	91	0	80	18	46	22	12	1.82
26649--27686	43	24.6	41	76	8	775	17	33	32	16	1.93
26671--26748	33	2.3	34	93	4	131	19	37	35	7	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26756--27673	85	10.8	85	82	4	736	17	33	32	16	1.93
26882--27615	298	2.5	298	92	2	1183	17	32	32	16	1.93
27691--27769	24	3.3	24	85	5	106	20	35	37	6	1.78
27978--28269	42	6.9	42	82	8	335	19	34	28	17	1.95

Tables:   1

The End!