Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1488
Parameters: 2 7 7 80 10 50 1000
Length:  40408

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--40408
501
81.6
506
91
6
62361
35
13
15
36
1.86
1685--1728
20
2.2
20
88
11
65
47
6
2
43
1.42
2700--2743
20
2.2
20
88
11
65
47
6
2
43
1.42
3684--3726
20
2.3
19
88
8
61
46
6
0
46
1.30
4195--4238
20
2.2
20
88
11
65
47
6
2
43
1.42
5180--5223
20
2.2
20
88
11
65
47
6
2
43
1.42
6204--6245
19
2.3
19
84
12
52
45
7
0
47
1.30
8197--8238
20
2.3
18
88
12
59
47
7
0
45
1.30
9170--9212
20
2.3
19
88
8
61
46
6
0
46
1.30
10651--10694
20
2.2
20
88
11
65
47
6
2
43
1.42
11633--11676
20
2.2
20
88
11
65
47
6
2
43
1.42
12611--12653
20
2.2
20
92
8
72
48
6
0
44
1.29
13090--13131
19
2.3
19
84
12
52
45
7
0
47
1.30
15044--15087
20
2.2
20
88
11
65
47
6
2
43
1.42
16033--16076
20
2.2
20
88
11
65
47
6
2
43
1.42
17008--17051
20
2.2
20
88
11
65
47
6
2
43
1.42
17993--18036
20
2.2
20
88
11
65
47
6
2
43
1.42
20980--21022
19
2.2
20
84
8
54
41
9
0
48
1.35
22461--22503
20
2.2
20
92
8
72
48
6
0
44
1.29
22960--23000
17
2.3
17
87
8
55
46
4
0
48
1.23
24452--24495
20
2.3
19
84
11
54
45
9
0
45
1.35
25454--25497
20
2.2
20
88
11
65
47
6
2
43
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26952--26986
18
1.9
18
88
0
52
42
8
0
48
1.33
27952--27993
18
2.2
19
91
8
68
50
4
0
45
1.23
27973--28006
17
2.1
17
88
5
52
52
11
0
35
1.38
29453--29492
19
2.3
19
87
12
59
45
7
0
47
1.31
30449--30492
20
2.2
20
88
11
65
47
6
2
43
1.42
32451--32494
20
2.2
20
88
11
65
47
6
2
43
1.42
33457--33500
20
2.2
20
88
11
65
47
6
2
43
1.42
35850--35893
19
2.4
18
85
7
54
59
11
0
29
1.32
36838--36880
20
2.3
19
88
8
61
46
6
0
46
1.30
39312--39352
18
2.3
18
91
0
64
48
2
0
48
1.14

Tables:   1

The End!