genome.fa.s1506.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2857
Parameters: 2 7 7 80 10 50 1000
Length:  40150

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2073--2165	42	2.2	43	90	3	143	19	39	27	12	1.88
2153--2201	25	2.0	25	91	0	80	18	46	22	12	1.82
2178--3219	43	24.6	41	76	8	743	18	33	32	16	1.93
2200--2278	34	2.3	34	93	2	131	18	37	35	7	1.80
2286--3206	85	10.8	84	81	5	693	17	33	32	16	1.93
2178--3078	256	3.5	254	84	4	1047	18	33	32	16	1.93
2412--3148	299	2.5	298	91	2	1149	18	32	32	16	1.93
2242--3219	256	3.8	256	83	5	697	18	33	32	16	1.93
3230--3296	24	2.8	24	90	2	98	19	35	37	7	1.80
3238--3303	25	2.7	24	90	2	96	19	36	39	4	1.72
3511--3802	42	6.9	42	82	8	335	19	34	28	17	1.95
11706--11798	42	2.2	43	90	3	143	19	39	27	12	1.88
11786--11834	25	2.0	25	91	0	80	18	46	22	12	1.82
11811--12850	43	24.6	42	76	8	851	17	33	32	16	1.93
11833--11911	34	2.3	34	93	2	131	18	37	35	7	1.80
11919--12837	85	10.8	84	82	5	718	17	33	32	16	1.93
11811--12711	256	3.6	254	85	4	1076	17	33	32	16	1.93
12045--12779	299	2.5	298	92	2	1192	17	32	32	16	1.93
12855--12933	24	3.3	24	85	5	106	20	35	37	6	1.78
13142--13433	42	6.9	42	82	8	335	19	34	28	17	1.95
21336--21428	42	2.2	43	90	3	143	19	39	27	12	1.88
21416--21464	25	2.0	25	91	0	80	18	46	22	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21441--22481	43	24.6	42	77	7	858	18	33	31	16	1.93
21463--21541	34	2.3	34	93	2	131	18	37	35	7	1.80
21441--22341	256	3.6	254	85	4	1085	17	33	32	16	1.93
21675--22410	299	2.5	298	92	1	1190	18	32	32	16	1.93
21505--22481	85	11.5	86	83	2	933	18	33	32	16	1.93
22486--22564	24	3.3	24	85	5	106	20	35	37	6	1.78
22773--23064	42	6.9	42	82	8	335	19	34	28	17	1.95
30967--31059	42	2.2	43	90	3	143	19	39	27	12	1.88
31047--31095	25	2.0	25	91	0	80	18	46	22	12	1.82
31072--32111	43	24.6	42	76	8	833	18	33	32	16	1.93
31094--31172	34	2.3	34	93	2	131	18	37	35	7	1.80
31306--32040	299	2.5	297	91	2	1172	17	32	32	16	1.93
31136--32111	85	11.5	86	83	3	908	17	33	32	16	1.93
32116--32194	24	3.3	24	85	5	106	20	35	37	6	1.78
32403--32694	42	6.9	42	82	8	335	19	34	28	17	1.95

Tables:   1

The End!